Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004402A_C01 KMC004402A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_212269.1| hypothetical protein XP_212269 [Homo sapiens] 35 0.71
ref|XP_226839.1| similar to phosphatidylinositol-3 phosphate 3-p... 33 1.6
ref|NP_051954.1| gp065R [Rabbit fibroma virus] gi|6578593|gb|AAF... 33 1.6
gb|ZP_00035750.1| hypothetical protein [Enterococcus faecium] 32 6.0
>ref|XP_212269.1| hypothetical protein XP_212269 [Homo sapiens]
Length = 107
Score = 34.7 bits (78), Expect = 0.71
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +3
Query: 213 WILITMGAFSFSSSGITPRTK--YILPFSSLGPEVKYTHL*ASFFFPKLKQKTFSNPSFS 386
W L+T+ S + PRT+ ++L + EVK THL + F P + F+N + +
Sbjct: 2 WRLLTL-------SHVVPRTEMAFVLTYMDPKGEVKKTHLHLASFSPSSEVSCFTNKAQA 54
Query: 387 QHCVVISSENIHQTSRMSLLTESTF*V*ILGPKWTTNLCYLPRIIMY 527
++C V + + R T+S +G W T C +++
Sbjct: 55 KNCSVEGCPSEWSSPRNLRSTKS------IGTIWATGGCLCSGTVLH 95
>ref|XP_226839.1| similar to phosphatidylinositol-3 phosphate 3-phosphatase adaptor
subunit; KIAA1682 protein; 3-phosphatase adapter subunit
[Homo sapiens] [Rattus norvegicus]
Length = 763
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/55 (30%), Positives = 30/55 (53%)
Frame = -2
Query: 258 YQMKRKKMLPS*SISNEHIHETYCIFCTTFRVSSTVCQFQTDTRCFSFISSIGYI 94
Y+M + + L S +S + I +YC F F + S+ + TD + FS + S G++
Sbjct: 285 YEMVKTEDLSSNFLSLQEIQSSYCKFKQLFLIDSSSEFWDTDVKWFSLLESSGWL 339
>ref|NP_051954.1| gp065R [Rabbit fibroma virus] gi|6578593|gb|AAF17947.1|AF170722_65
gp065R [Rabbit fibroma virus]
Length = 338
Score = 33.5 bits (75), Expect = 1.6
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +2
Query: 152 TVDETLKVVQKIQYVS*ICS----LDIDYDGSIFFLFIWYHSKNQIYSTLFFSGT*SKI- 316
T ++LK +K+ Y++ I ++ DY + F YH +YS F+ SK+
Sbjct: 225 TQQDSLKYEKKMYYLNKIIRNRIIINFDYSNQEYDFFHMYHMLKTVYSNKSFTSNKSKVL 284
Query: 317 HPFVSIFLLPKIETKDFFQPLIQPTLC 397
H SIF KI + + +PT C
Sbjct: 285 HLHQSIFRFLKIPITNTEKIHHEPTQC 311
>gb|ZP_00035750.1| hypothetical protein [Enterococcus faecium]
Length = 160
Score = 31.6 bits (70), Expect = 6.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 301 PREEKGRIYLVLGVIPDEEKENAP 230
PR +G+I+L L IP +EKEN P
Sbjct: 101 PRSAQGKIHLFLSSIPGKEKENVP 124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,363,467
Number of Sequences: 1393205
Number of extensions: 9757240
Number of successful extensions: 19883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19875
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
