Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004399A_C01 KMC004399A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73232.1| putative oxidoreductase protein [Oryza sativa (ja... 139 5e-54
ref|NP_568145.1| putative protein; protein id: At5g04900.1, supp... 139 8e-54
dbj|BAB11512.1| gene_id:MUG13.25~pir||T07705~similar to unknown ... 139 8e-48
ref|NP_662034.1| oxidoreductase, short-chain dehydrogenase/reduc... 55 8e-07
ref|NP_567400.1| putative protein; protein id: At4g13250.1, supp... 54 1e-06
>gb|AAO73232.1| putative oxidoreductase protein [Oryza sativa (japonica
cultivar-group)]
Length = 343
Score = 139 bits (351), Expect(2) = 5e-54
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -2
Query: 658 GAGSDGRPTPSFAAYGATKRSVVHLTKSLQAELQMQDVNNVMVHNLSPGMVTTDLLMSGA 479
GAGSDGRPTP FAAYGATKRSVVHLTKSLQAELQM +VNNVMVHNLSPGMVTTDLLMSGA
Sbjct: 214 GAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMNEVNNVMVHNLSPGMVTTDLLMSGA 273
Query: 478 NTKQAKFFINVLAE 437
TKQAKFFIN+LAE
Sbjct: 274 TTKQAKFFINILAE 287
Score = 94.0 bits (232), Expect(2) = 5e-54
Identities = 43/57 (75%), Positives = 52/57 (90%)
Frame = -3
Query: 438 KPAEVVAEYLVPNIRSIPSHGPMRPTYIRFLTGLKAYSQIFSRFAFGARRNRYILED 268
+PA VVA+YLVPNIR+IP++ M+PTYIRFLTGLKAYS+IFSR AFGARRN+Y+ ED
Sbjct: 287 EPANVVADYLVPNIRAIPTNQSMKPTYIRFLTGLKAYSRIFSRIAFGARRNKYVAED 343
>ref|NP_568145.1| putative protein; protein id: At5g04900.1, supported by cDNA:
14018. [Arabidopsis thaliana] gi|21553369|gb|AAM62462.1|
unknown [Arabidopsis thaliana]
Length = 348
Score = 139 bits (351), Expect(2) = 8e-54
Identities = 70/74 (94%), Positives = 71/74 (95%)
Frame = -2
Query: 658 GAGSDGRPTPSFAAYGATKRSVVHLTKSLQAELQMQDVNNVMVHNLSPGMVTTDLLMSGA 479
GAGSDGRPTP FAAYGATKRSVVHLTKSLQAELQMQDV NV+VHNLSPGMVTTDLLMSGA
Sbjct: 219 GAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGA 278
Query: 478 NTKQAKFFINVLAE 437
TKQAKFFINVLAE
Sbjct: 279 TTKQAKFFINVLAE 292
Score = 93.2 bits (230), Expect(2) = 8e-54
Identities = 42/57 (73%), Positives = 52/57 (90%)
Frame = -3
Query: 438 KPAEVVAEYLVPNIRSIPSHGPMRPTYIRFLTGLKAYSQIFSRFAFGARRNRYILED 268
+PAEVVAEYLVPNIR+IP+ G M+PTYIRFLTG+KAY++IFSR A GAR+NRY+ E+
Sbjct: 292 EPAEVVAEYLVPNIRAIPASGSMKPTYIRFLTGIKAYTKIFSRVALGARKNRYVTEE 348
>dbj|BAB11512.1| gene_id:MUG13.25~pir||T07705~similar to unknown protein
[Arabidopsis thaliana]
Length = 341
Score = 139 bits (351), Expect(2) = 8e-48
Identities = 70/74 (94%), Positives = 71/74 (95%)
Frame = -2
Query: 658 GAGSDGRPTPSFAAYGATKRSVVHLTKSLQAELQMQDVNNVMVHNLSPGMVTTDLLMSGA 479
GAGSDGRPTP FAAYGATKRSVVHLTKSLQAELQMQDV NV+VHNLSPGMVTTDLLMSGA
Sbjct: 219 GAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGA 278
Query: 478 NTKQAKFFINVLAE 437
TKQAKFFINVLAE
Sbjct: 279 TTKQAKFFINVLAE 292
Score = 73.2 bits (178), Expect(2) = 8e-48
Identities = 33/42 (78%), Positives = 40/42 (94%)
Frame = -3
Query: 438 KPAEVVAEYLVPNIRSIPSHGPMRPTYIRFLTGLKAYSQIFS 313
+PAEVVAEYLVPNIR+IP+ G M+PTYIRFLTG+KAY++IFS
Sbjct: 292 EPAEVVAEYLVPNIRAIPASGSMKPTYIRFLTGIKAYTKIFS 333
>ref|NP_662034.1| oxidoreductase, short-chain dehydrogenase/reductase family
[Chlorobium tepidum TLS] gi|21647112|gb|AAM72376.1|
oxidoreductase, short-chain dehydrogenase/reductase
family [Chlorobium tepidum TLS]
Length = 278
Score = 55.1 bits (131), Expect = 8e-07
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = -2
Query: 640 RPTPSFAAYGATKRSVVHLTKSLQAELQMQDVNNVMVHNLSPGMVTTDLLMSGANTKQAK 461
R +P+ + A+KR+V ++K L+ EL+ + +V +H LSPG+V TDLL+ A Q +
Sbjct: 156 RSSPTSVPHRASKRAVAIMSKLLRQELEAAGIRSVGIHELSPGLVLTDLLLRDATPAQKR 215
Query: 460 FFINVLAE 437
FF N +AE
Sbjct: 216 FF-NAMAE 222
>ref|NP_567400.1| putative protein; protein id: At4g13250.1, supported by cDNA:
gi_16323185 [Arabidopsis thaliana]
gi|16323186|gb|AAL15327.1| AT4g13250/F17N18_140
[Arabidopsis thaliana]
Length = 496
Score = 54.3 bits (129), Expect = 1e-06
Identities = 32/74 (43%), Positives = 43/74 (57%)
Frame = -2
Query: 658 GAGSDGRPTPSFAAYGATKRSVVHLTKSLQAELQMQDVNNVMVHNLSPGMVTTDLLMSGA 479
GAGS G TP A YG+TK + S+ E Q NV +H SPGMV T+LL+SG+
Sbjct: 316 GAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKESQK---TNVGLHTASPGMVLTELLLSGS 372
Query: 478 NTKQAKFFINVLAE 437
+ K + F N++ E
Sbjct: 373 SIKNKQMF-NIICE 385
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,946,625
Number of Sequences: 1393205
Number of extensions: 12226980
Number of successful extensions: 29791
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 28920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29766
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
