Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004397A_C01 KMC004397A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563645.1| COP9 complex subunit, FUS5; protein id: At1g020... 51 1e-05
gb|ZP_00069545.1| hypothetical protein [Oenococcus oeni MCW] 35 0.78
ref|NP_459202.1| putative periplasmic fimbrial chaperone [Salmon... 33 2.3
pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.... 33 3.0
ref|NP_416839.1| putative chaperone [Escherichia coli K12] gi|28... 33 3.9
>ref|NP_563645.1| COP9 complex subunit, FUS5; protein id: At1g02090.1, supported by
cDNA: 40042., supported by cDNA: gi_13937160, supported
by cDNA: gi_18056670 [Arabidopsis thaliana]
gi|13937161|gb|AAK50074.1|AF372934_1 At1g02090/T7I23_24
[Arabidopsis thaliana]
gi|18056671|gb|AAL58109.1|AF395066_1 CSN complex subunit
7ii [Arabidopsis thaliana] gi|21593551|gb|AAM65518.1|
FUS5 [Arabidopsis thaliana] gi|22137006|gb|AAM91348.1|
At1g02090/T7I23_24 [Arabidopsis thaliana]
Length = 260
Score = 51.2 bits (121), Expect = 1e-05
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = -3
Query: 591 QADIDFIRGHEEICSESGGVMDYEEDRTRPKRRRHPIS 478
+ D+D IRG++E+ E GVMDYEED RPKRRRHP++
Sbjct: 223 KGDVD-IRGNKEMFGEPSGVMDYEEDGIRPKRRRHPVT 259
>gb|ZP_00069545.1| hypothetical protein [Oenococcus oeni MCW]
Length = 391
Score = 35.0 bits (79), Expect = 0.78
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = -3
Query: 468 SSLDECFSCLPDFYSWHALTENISAFGDVYISLVLHLSVTPQSEIGTKKIGKENML--FL 295
+SLD+ S +P+ S H L ++ + FG V +SL L + + +S+ KK+ + ++ L
Sbjct: 232 ASLDKKTSTIPNPLSLHTLYDSFAIFGGVSMSLALIIVLLIRSKNSQKKLAQIALIPSLL 291
Query: 294 QDCSLAIDGIP*TFVNPIL 238
+ + G+P F+NP+L
Sbjct: 292 NNNQILNFGLP-FFLNPLL 309
>ref|NP_459202.1| putative periplasmic fimbrial chaperone [Salmonella typhimurium
LT2] gi|3747031|gb|AAC64154.1| periplasmic fimbrial
chaperone StfD [Salmonella typhimurium]
gi|16418700|gb|AAL19161.1| putative periplasmic fimbrial
chaperone [Salmonella typhimurium LT2]
Length = 250
Score = 33.5 bits (75), Expect = 2.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 239 SIGLTKVQGMPSIAKLQS*RNNMFSFPIFFVPISLCGVTDKCNTNEIYTSPKADIF 406
+IG K+QGMP++A L R +F + + +P +DK NT +I + +F
Sbjct: 87 AIGQVKIQGMPALASLPQDRETLFYYNVREIPPQ----SDKPNTLQIALQTRIKVF 138
>pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 3,
kinetoplast - Trypanosoma brucei mitochondrion
(fragment) gi|468424|gb|AAA20887.1| CR5
Length = 150
Score = 33.1 bits (74), Expect = 3.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 215 MVLRLFLVFLNAFYCFLCIILHVHICCLHCIAILYGKY 102
++L ++F+ F CFLC +LH C C+ G Y
Sbjct: 19 LILWFIILFIGFFLCFLCFLLHFFDCFRCCLWFSCGLY 56
>ref|NP_416839.1| putative chaperone [Escherichia coli K12]
gi|2829658|sp|P77599|YFCS_ECOLI Hypothetical fimbrial
chaperone yfcS precursor gi|7428942|pir||F65006
hypothetical protein b2336 - Escherichia coli (strain
K-12) gi|1788677|gb|AAC75396.1| putative chaperone
[Escherichia coli K12] gi|1799727|dbj|BAA16190.1|
CHAPERONE PROTEIN PMFD PRECURSOR. [Escherichia coli]
Length = 250
Score = 32.7 bits (73), Expect = 3.9
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 245 GLTKVQGMPSIAKLQS*RNNMFSFPIFFVPISLCGVTDKCNTNEIYTSPKADIF 406
G KVQGMP I KL + R +MF F + +P ++K NT +I + +F
Sbjct: 92 GQVKVQGMPDINKLPADRESMFYFNVREIPPK----SNKPNTLQIALQTRIKLF 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,454,860
Number of Sequences: 1393205
Number of extensions: 10968061
Number of successful extensions: 28876
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28844
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
