Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004395A_C02 KMC004395A_c02
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566064.1| expressed protein; protein id: At2g46090.1, sup... 49 3e-05
gb|AAA97428.1| ATPase 6 43 0.003
sp|P24499|ATP6_TRYBB ATP synthase A chain (Protein 6) 43 0.003
pir||A35349 H+-transporting ATP synthase protein 6 homolog - Try... 41 0.009
gb|AAA81668.1| ATPase subunit 6 41 0.012
>ref|NP_566064.1| expressed protein; protein id: At2g46090.1, supported by cDNA:
gi_14423553 [Arabidopsis thaliana]
gi|25408959|pir||F84898 hypothetical protein At2g46090
[imported] - Arabidopsis thaliana
gi|3702338|gb|AAC62895.1| expressed protein [Arabidopsis
thaliana]
Length = 364
Score = 49.3 bits (116), Expect = 3e-05
Identities = 20/29 (68%), Positives = 25/29 (85%)
Frame = -3
Query: 569 GGVYIQSDGEHLGFLPKKISVHPGAIEMI 483
G +Y+QSDGEHLGFLP+K V PGAI++I
Sbjct: 335 GSIYVQSDGEHLGFLPRKFQVLPGAIDII 363
>gb|AAA97428.1| ATPase 6
Length = 231
Score = 42.7 bits (99), Expect = 0.003
Identities = 21/66 (31%), Positives = 37/66 (55%), Gaps = 3/66 (4%)
Frame = -3
Query: 212 DTGLSILHTQLLICFLDSFKSICRC--SYIIVPCELCKEYLTTLVPFDLF-FCFIFYFK* 42
D+ + + + L+CFL+ F +CRC +++ + C L + L+ FD F F F+F+F
Sbjct: 116 DSFMDVFFIRFLLCFLECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFF-- 173
Query: 41 LLHIFC 24
+FC
Sbjct: 174 -YGVFC 178
>sp|P24499|ATP6_TRYBB ATP synthase A chain (Protein 6)
Length = 229
Score = 42.7 bits (99), Expect = 0.003
Identities = 21/66 (31%), Positives = 37/66 (55%), Gaps = 3/66 (4%)
Frame = -3
Query: 212 DTGLSILHTQLLICFLDSFKSICRC--SYIIVPCELCKEYLTTLVPFDLF-FCFIFYFK* 42
D+ + + + L+CFL+ F +CRC +++ + C L + L+ FD F F F+F+F
Sbjct: 115 DSFMDVFFIRFLLCFLECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFF-- 172
Query: 41 LLHIFC 24
+FC
Sbjct: 173 -YGVFC 177
>pir||A35349 H+-transporting ATP synthase protein 6 homolog - Trypanosoma brucei
mitochondrion
Length = 214
Score = 41.2 bits (95), Expect = 0.009
Identities = 19/58 (32%), Positives = 34/58 (57%), Gaps = 3/58 (5%)
Frame = -3
Query: 212 DTGLSILHTQLLICFLDSFKSICRC--SYIIVPCELCKEYLTTLVPFDLF-FCFIFYF 48
D+ + + + L+CFL+ F +CRC +++ + C L + L+ FD F F F+F+F
Sbjct: 116 DSFMDVFFIRPLLCFLECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFF 173
>gb|AAA81668.1| ATPase subunit 6
Length = 233
Score = 40.8 bits (94), Expect = 0.012
Identities = 21/73 (28%), Positives = 37/73 (49%), Gaps = 11/73 (15%)
Frame = -3
Query: 212 DTGLSILHTQLLICFLDSFKSICRC--SYIIVPCELCKEYLTTLVPFD---------LFF 66
D + + + L+CFL+ F +CRC +++ + C L + L+ FD +FF
Sbjct: 116 DNFMDVFFIRFLLCFLECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFLYFFFVFFIFF 175
Query: 65 CFIFYFK*LLHIF 27
CF+ + +L IF
Sbjct: 176 CFLDFLVFILFIF 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,541,022
Number of Sequences: 1393205
Number of extensions: 9731705
Number of successful extensions: 23696
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 23039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23686
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
