Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004392A_C01 KMC004392A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF05766.1|AF192758_1 indole-3-acetic acid induced protein AR... 80 8e-15
sp|P32292|ARG2_PHAAU INDOLE-3-ACETIC ACID INDUCED PROTEIN ARG2 g... 69 2e-11
ref|NP_171781.1| late embryogenis abundant protein, putative; pr... 55 5e-07
pir||T01984 late-embryogenesis protein lea5 - common tobacco gi|... 54 6e-07
ref|NP_567231.1| coded for by A. thaliana cDNA T46835; protein i... 54 1e-06
>gb|AAF05766.1|AF192758_1 indole-3-acetic acid induced protein ARG-2 homolog [Glycine max]
Length = 86
Score = 80.5 bits (197), Expect = 8e-15
Identities = 38/47 (80%), Positives = 41/47 (86%)
Frame = -2
Query: 439 GEDKGASTYKXSWVPDPVTGYYKPENTKEVVDVAEMRAMLLAKKFNN 299
GEDKG S+YK SWVPDPVTGYYKPEN KE VDVA++RA LL KKFNN
Sbjct: 41 GEDKGVSSYKVSWVPDPVTGYYKPENIKE-VDVADLRATLLRKKFNN 86
>sp|P32292|ARG2_PHAAU INDOLE-3-ACETIC ACID INDUCED PROTEIN ARG2 gi|7488882|pir||T10900
late-embryogenesis protein homolog - mung bean
gi|287564|dbj|BAA03307.1| ORF [Vigna radiata]
Length = 99
Score = 69.3 bits (168), Expect = 2e-11
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = -2
Query: 463 GSGMTKMGGEDKGASTYKXSWVPDPVTGYYKPENTKEVVDVAEMRAMLLAKKFN 302
G M GE+K K SWVPDPVTGYY+PENT E +DVA+MRA +L KKFN
Sbjct: 46 GGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPENTNE-IDVADMRATVLGKKFN 98
>ref|NP_171781.1| late embryogenis abundant protein, putative; protein id:
At1g02820.1, supported by cDNA: 96540. [Arabidopsis
thaliana] gi|25511624|pir||D86158 F22D16.18 protein -
Arabidopsis thaliana
gi|6056420|gb|AAF02884.1|AC009525_18 Similar to late
embryogenis abundant protein 5 [Arabidopsis thaliana]
gi|21618083|gb|AAM67133.1| late embryogenis abundant
protein, putative [Arabidopsis thaliana]
Length = 91
Score = 54.7 bits (130), Expect = 5e-07
Identities = 27/49 (55%), Positives = 32/49 (65%)
Frame = -2
Query: 454 MTKMGGEDKGASTYKXSWVPDPVTGYYKPENTKEVVDVAEMRAMLLAKK 308
M K GE AS+ K WVPDP TGYY+PE E +D AE+RA+LL K
Sbjct: 45 MKKRAGE---ASSEKAPWVPDPKTGYYRPETVSEEIDPAELRAILLNNK 90
>pir||T01984 late-embryogenesis protein lea5 - common tobacco
gi|2981167|gb|AAC06242.1| late embryogenis abundant
protein 5 [Nicotiana tabacum]
Length = 97
Score = 54.3 bits (129), Expect = 6e-07
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = -2
Query: 463 GSGMTKMGGEDKGASTYKXSWVPDPVTGYYKPENTKEVVDVAEMRAMLLAKK 308
GSG+ M + + +S SWVPDPVTGYY+PE+ + +D AE+R MLL K
Sbjct: 42 GSGVNIMMKKWEESSKKTTSWVPDPVTGYYRPESHAKEIDAAELRQMLLNHK 93
>ref|NP_567231.1| coded for by A. thaliana cDNA T46835; protein id: At4g02380.1,
supported by cDNA: 23194., supported by cDNA:
gi_14517507, supported by cDNA: gi_15294219, supported
by cDNA: gi_15450608, supported by cDNA: gi_15809759
[Arabidopsis thaliana] gi|14517508|gb|AAK62644.1|
AT4g02380/T14P8_2 [Arabidopsis thaliana]
gi|15294220|gb|AAK95287.1|AF410301_1 AT4g02380/T14P8_2
[Arabidopsis thaliana] gi|15450609|gb|AAK96576.1|
AT4g02380/T14P8_2 [Arabidopsis thaliana]
gi|15809760|gb|AAL06808.1| AT4g02380/T14P8_2
[Arabidopsis thaliana] gi|21592389|gb|AAM64340.1| late
embryogenis abundant protein [Arabidopsis thaliana]
Length = 97
Score = 53.5 bits (127), Expect = 1e-06
Identities = 27/49 (55%), Positives = 31/49 (63%)
Frame = -2
Query: 454 MTKMGGEDKGASTYKXSWVPDPVTGYYKPENTKEVVDVAEMRAMLLAKK 308
M K G E+ ST K SWVPDP TGYY+PE +D AE+RA LL K
Sbjct: 51 MKKKGVEE---STQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,307,743
Number of Sequences: 1393205
Number of extensions: 7387542
Number of successful extensions: 27128
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 20339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24372
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
