Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004387A_C01 KMC004387A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96715 protein F4N2.12 [imported] - Arabidopsis thaliana gi... 67 2e-10
ref|NP_564952.1| expressed protein; protein id: At1g69160.1, sup... 67 2e-10
ref|NP_188014.1| hypothetical protein; protein id: At3g13980.1 [... 43 0.003
ref|NP_473074.1| DNA helicase, putative [Plasmodium falciparum 3... 39 0.052
ref|NP_764305.1| N-acetylmuramoyl-L-alanine amidase; mannosyl-gl... 37 0.20
>pir||E96715 protein F4N2.12 [imported] - Arabidopsis thaliana
gi|6730636|gb|AAF27057.1|AC008262_6 F4N2.12 [Arabidopsis
thaliana]
Length = 319
Score = 66.6 bits (161), Expect = 2e-10
Identities = 44/98 (44%), Positives = 60/98 (60%), Gaps = 1/98 (1%)
Frame = -3
Query: 461 QNELKKDSTFLDDKYKHSNNGLSEKQKNWGN-ELLEKDRTWLEKYSLEEKDIRKFNEVDD 285
+ + K+ ++LD+K K + LSE Q+ W + E ++ DR I++ E DD
Sbjct: 234 ETKTNKEYSWLDEKLKVMES-LSENQRIWSDDEDIDDDRR-----------IKREGE-DD 280
Query: 284 GAESDSSSDLFELQNYDLGYCSSGLPVYETTNMDNIKR 171
G ESDSSSDLFELQNY+L GLPVYETTN+ NI +
Sbjct: 281 GMESDSSSDLFELQNYELS--RGGLPVYETTNVANINK 316
>ref|NP_564952.1| expressed protein; protein id: At1g69160.1, supported by cDNA:
gi_16648778, supported by cDNA: gi_20260557 [Arabidopsis
thaliana] gi|16648779|gb|AAL25580.1| At1g69160/F4N2_9
[Arabidopsis thaliana] gi|20260558|gb|AAM13177.1|
putative myb-like protein sp|P34127 [Arabidopsis
thaliana] gi|28059382|gb|AAO30053.1| putative myb-like
protein sp|P34127 [Arabidopsis thaliana]
Length = 321
Score = 66.6 bits (161), Expect = 2e-10
Identities = 44/98 (44%), Positives = 60/98 (60%), Gaps = 1/98 (1%)
Frame = -3
Query: 461 QNELKKDSTFLDDKYKHSNNGLSEKQKNWGN-ELLEKDRTWLEKYSLEEKDIRKFNEVDD 285
+ + K+ ++LD+K K + LSE Q+ W + E ++ DR I++ E DD
Sbjct: 236 ETKTNKEYSWLDEKLKVMES-LSENQRIWSDDEDIDDDRR-----------IKREGE-DD 282
Query: 284 GAESDSSSDLFELQNYDLGYCSSGLPVYETTNMDNIKR 171
G ESDSSSDLFELQNY+L GLPVYETTN+ NI +
Sbjct: 283 GMESDSSSDLFELQNYELS--RGGLPVYETTNVANINK 318
>ref|NP_188014.1| hypothetical protein; protein id: At3g13980.1 [Arabidopsis
thaliana] gi|11994369|dbj|BAB02328.1|
gb|AAD25600.1~gene_id:MDC16.10~similar to unknown
protein [Arabidopsis thaliana]
Length = 357
Score = 42.7 bits (99), Expect = 0.003
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = -3
Query: 350 RTWLEKYSLEEKDIRKFNEVD-DGAESDSSSDLFELQNYD---LGYCSSGLPVYETTNMD 183
RT+ K + +I E D D A S +SSDLFEL+N + LPVYETT +D
Sbjct: 286 RTYHNKNKVTTTNINNVEEDDEDDAASCASSDLFELENLSAIGIERYREELPVYETTRLD 345
Query: 182 NIKRGAPISSGLL 144
N+ R I++GL+
Sbjct: 346 NMNR--VIATGLI 356
>ref|NP_473074.1| DNA helicase, putative [Plasmodium falciparum 3D7]
gi|7494157|pir||F71607 DNA helicase II BRAHMA homolog
PFB0730w - malaria parasite (Plasmodium falciparum)
gi|3845262|gb|AAC71935.1| DNA helicase, putative
[Plasmodium falciparum 3D7]
Length = 1997
Score = 38.5 bits (88), Expect = 0.052
Identities = 28/92 (30%), Positives = 48/92 (51%), Gaps = 2/92 (2%)
Frame = -3
Query: 494 KLNGHAKQNTLQNELKKDS-TFLDDKYKHSNNGLSEKQKNWGNELLEKDRTWLEKYSL-E 321
K N + K + ++N+ +K++ DD+ K + + + E Q N N L KDR + +L +
Sbjct: 214 KNNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVMENQLNQSNILYNKDRIRKNRNNLKD 273
Query: 320 EKDIRKFNEVDDGAESDSSSDLFELQNYDLGY 225
EKD+ N +DD + F+LQ+ GY
Sbjct: 274 EKDVSNKNILDDNKDIVE----FKLQDISSGY 301
>ref|NP_764305.1| N-acetylmuramoyl-L-alanine amidase; mannosyl-glycoprotein
endo-beta-N-acetylglucosaminidase [Staphylococcus
epidermidis ATCC 12228]
gi|27315212|gb|AAO04347.1|AE016746_137
N-acetylmuramoyl-L-alanine amidase;
mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
[Staphylococcus epidermidis ATCC 12228]
Length = 1335
Score = 36.6 bits (83), Expect = 0.20
Identities = 19/69 (27%), Positives = 39/69 (55%), Gaps = 1/69 (1%)
Frame = -3
Query: 470 NTLQNELKKDSTFLDDKYKHSNNGLSEKQKNWGNELLEKDRTWLEKYSLEE-KDIRKFNE 294
N + + K+ S DD ++ N +++ Q+ N+L ++D+T + L+E + + K NE
Sbjct: 100 NEISSNQKQQSLSTDDANQNQTNSVTKNQQEETNDLTQEDKTSTDTNQLQETQSVAKENE 159
Query: 293 VDDGAESDS 267
D GA +++
Sbjct: 160 KDLGANANN 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,342,899
Number of Sequences: 1393205
Number of extensions: 9346056
Number of successful extensions: 33395
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 31126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33246
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
