Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004379A_C01 KMC004379A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11142.1| bZIP transcription factor-like protein [Arabidop... 207 9e-53
ref|NP_196302.2| bZIP transcription factor family protein; prote... 207 9e-53
emb|CAC40649.1| bZIP transcription factor [Arabidopsis thaliana] 206 2e-52
gb|AAF06696.1|AF031487_1 bZIP transcription factor [Nicotiana ta... 174 5e-43
pir||C54415 transcription factor HBP-1b(c1) - wheat (fragment) g... 174 9e-43
>dbj|BAB11142.1| bZIP transcription factor-like protein [Arabidopsis thaliana]
Length = 313
Score = 207 bits (526), Expect = 9e-53
Identities = 102/139 (73%), Positives = 124/139 (88%), Gaps = 5/139 (3%)
Frame = -3
Query: 561 SELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNHSLSDTITSDSLS--- 391
SE+IK+I++QIEPLTEQQI+GICGLQQSTQEAEEALSQGLEALN SLSD+I SDSL
Sbjct: 174 SEIIKVIVNQIEPLTEQQIVGICGLQQSTQEAEEALSQGLEALNQSLSDSIVSDSLPPAS 233
Query: 390 --CPPNMANYMGQMAVAMNKLSTLEGFLRQADNLRHQTLHRLHQLLTTQQAARCLVAISE 217
PP+++N+M M++A+NKLS LEGF+ QADNLRHQT+HRL+QLLTT+Q ARCL+A++E
Sbjct: 234 APLPPHLSNFMSHMSLALNKLSALEGFVLQADNLRHQTIHRLNQLLTTRQEARCLLAVAE 293
Query: 216 YFHRLRALSSLWLTRPRQE 160
YFHRL+ALSSLWL RPRQ+
Sbjct: 294 YFHRLQALSSLWLARPRQD 312
>ref|NP_196302.2| bZIP transcription factor family protein; protein id: At5g06840.1
[Arabidopsis thaliana]
Length = 426
Score = 207 bits (526), Expect = 9e-53
Identities = 102/139 (73%), Positives = 124/139 (88%), Gaps = 5/139 (3%)
Frame = -3
Query: 561 SELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNHSLSDTITSDSLS--- 391
SE+IK+I++QIEPLTEQQI+GICGLQQSTQEAEEALSQGLEALN SLSD+I SDSL
Sbjct: 287 SEIIKVIVNQIEPLTEQQIVGICGLQQSTQEAEEALSQGLEALNQSLSDSIVSDSLPPAS 346
Query: 390 --CPPNMANYMGQMAVAMNKLSTLEGFLRQADNLRHQTLHRLHQLLTTQQAARCLVAISE 217
PP+++N+M M++A+NKLS LEGF+ QADNLRHQT+HRL+QLLTT+Q ARCL+A++E
Sbjct: 347 APLPPHLSNFMSHMSLALNKLSALEGFVLQADNLRHQTIHRLNQLLTTRQEARCLLAVAE 406
Query: 216 YFHRLRALSSLWLTRPRQE 160
YFHRL+ALSSLWL RPRQ+
Sbjct: 407 YFHRLQALSSLWLARPRQD 425
>emb|CAC40649.1| bZIP transcription factor [Arabidopsis thaliana]
Length = 417
Score = 206 bits (523), Expect = 2e-52
Identities = 102/139 (73%), Positives = 123/139 (88%), Gaps = 5/139 (3%)
Frame = -3
Query: 561 SELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNHSLSDTITSDSLS--- 391
SE+IK+I++QIEPLTEQQI+GICGLQQSTQEAEEALSQGLEALN SLSD+I SDSL
Sbjct: 278 SEIIKVIVNQIEPLTEQQIVGICGLQQSTQEAEEALSQGLEALNQSLSDSIVSDSLPPAS 337
Query: 390 --CPPNMANYMGQMAVAMNKLSTLEGFLRQADNLRHQTLHRLHQLLTTQQAARCLVAISE 217
PP+++N+M M +A+NKLS LEGF+ QADNLRHQT+HRL+QLLTT+Q ARCL+A++E
Sbjct: 338 APLPPHLSNFMSHMFLALNKLSALEGFVLQADNLRHQTIHRLNQLLTTRQEARCLLAVAE 397
Query: 216 YFHRLRALSSLWLTRPRQE 160
YFHRL+ALSSLWL RPRQ+
Sbjct: 398 YFHRLQALSSLWLARPRQD 416
>gb|AAF06696.1|AF031487_1 bZIP transcription factor [Nicotiana tabacum]
Length = 325
Score = 174 bits (442), Expect = 5e-43
Identities = 87/135 (64%), Positives = 113/135 (83%), Gaps = 2/135 (1%)
Frame = -3
Query: 561 SELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNHSLSDTITSD--SLSC 388
SEL+K++++Q+EPLTEQQ+L I LQQS+Q+AE+ALSQG+EAL SL++T+ S
Sbjct: 191 SELLKLLINQLEPLTEQQLLAINNLQQSSQQAEDALSQGMEALQQSLAETLAGSLGPSSS 250
Query: 387 PPNMANYMGQMAVAMNKLSTLEGFLRQADNLRHQTLHRLHQLLTTQQAARCLVAISEYFH 208
N+ANYMGQMA+AM KL TLEGF+RQADNLR QTL ++H++LTT+Q+AR L+AIS+YF
Sbjct: 251 SGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAISDYFS 310
Query: 207 RLRALSSLWLTRPRQ 163
RLRALSSLWL RPR+
Sbjct: 311 RLRALSSLWLARPRE 325
>pir||C54415 transcription factor HBP-1b(c1) - wheat (fragment)
gi|5926682|dbj|BAA02305.2| transcription factor
HBP-1b(c1) [Triticum aestivum]
Length = 476
Score = 174 bits (440), Expect = 9e-43
Identities = 88/136 (64%), Positives = 112/136 (81%), Gaps = 3/136 (2%)
Frame = -3
Query: 561 SELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNHSLSDTITSDSLS--- 391
SEL+K++ Q+EPLTEQQ+ GIC LQQS+Q+AE+ALSQG+EAL SL++T+ S SL
Sbjct: 341 SELLKLLAGQLEPLTEQQLTGICNLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAG 400
Query: 390 CPPNMANYMGQMAVAMNKLSTLEGFLRQADNLRHQTLHRLHQLLTTQQAARCLVAISEYF 211
N+A+YMGQMA+AM KL TLE FLRQADNLR QTL ++ ++LTT+Q+AR L+AIS+YF
Sbjct: 401 SSGNVASYMGQMAMAMGKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARALLAISDYF 460
Query: 210 HRLRALSSLWLTRPRQ 163
RLRALSSLWL RPR+
Sbjct: 461 SRLRALSSLWLARPRE 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,560,406
Number of Sequences: 1393205
Number of extensions: 10000117
Number of successful extensions: 30114
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 28445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30023
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
