Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004375A_C01 KMC004375A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178534.1| putative protein phosphatase; protein id: At2g0... 55 5e-07
gb|AAO42283.1| putative protein phosphatase [Arabidopsis thalian... 55 5e-07
gb|AAG22111.1| fibronectin-attachment protein FAP-P [Mycobacteri... 42 0.006
ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|... 39 0.038
dbj|BAC28996.1| unnamed protein product [Mus musculus] gi|263391... 38 0.064
>ref|NP_178534.1| putative protein phosphatase; protein id: At2g04550.1 [Arabidopsis
thaliana] gi|25411090|pir||G84458 probable protein
phosphatase [imported] - Arabidopsis thaliana
gi|4587597|gb|AAD25825.1| putative protein phosphatase
[Arabidopsis thaliana]
Length = 283
Score = 55.1 bits (131), Expect = 5e-07
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = -2
Query: 524 PSLSFGFPKINDSAPLPAFNPGGTPSIFARAPSDIAPAEFTFGAGPNGSCPPPQPT 357
P+ FGFPKI++ A P FN T SIF+ S I P EFTFGA PP+PT
Sbjct: 224 PTFGFGFPKIDNQAQAPVFNNAPTSSIFSSPASSIPPQEFTFGA------TPPKPT 273
>gb|AAO42283.1| putative protein phosphatase [Arabidopsis thaliana]
gi|28973409|gb|AAO64029.1| putative protein phosphatase
[Arabidopsis thaliana]
Length = 257
Score = 55.1 bits (131), Expect = 5e-07
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = -2
Query: 524 PSLSFGFPKINDSAPLPAFNPGGTPSIFARAPSDIAPAEFTFGAGPNGSCPPPQPT 357
P+ FGFPKI++ A P FN T SIF+ S I P EFTFGA PP+PT
Sbjct: 198 PTFGFGFPKIDNQAQAPVFNNAPTSSIFSSPASSIPPQEFTFGA------TPPKPT 247
>gb|AAG22111.1| fibronectin-attachment protein FAP-P [Mycobacterium avium subsp.
paratuberculosis] gi|13375561|gb|AAK20394.1|AF334165_1
fibronectin-binding protein P [Mycobacterium avium
subsp. paratuberculosis]
Length = 368
Score = 41.6 bits (96), Expect = 0.006
Identities = 28/73 (38%), Positives = 32/73 (43%)
Frame = -2
Query: 509 GFPKINDSAPLPAFNPGGTPSIFARAPSDIAPAEFTFGAGPNGSCPPPQPTPTPPNPNGD 330
G P N A P G P+ A AP+D A GA PNG+ PPP PP P D
Sbjct: 63 GQPAPNAQPAPGAPAPNGQPAPAAPAPNDPNAAPPPVGAPPNGAPPPPVDPNAPPPPPAD 122
Query: 329 YGWMTFGQGRLPN 291
GR+PN
Sbjct: 123 P-----NAGRIPN 130
>ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|gb|AAF55584.1|
CG7709-PA [Drosophila melanogaster]
Length = 950
Score = 38.9 bits (89), Expect = 0.038
Identities = 26/70 (37%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 527 PPSLSFGFPKINDSAPLPAFNPGGTPSIFARAPSDIAPAEFTFGA--GPNGSCPPPQPTP 354
PPS S+G P +AP ++ PS AP AP ++GA P+ S PP+P P
Sbjct: 408 PPSSSYGAP----AAPSKSYGAPAPPSSSYGAP---APPSSSYGAPSAPSSSYGPPKPAP 460
Query: 353 TPPNPNGDYG 324
PP + YG
Sbjct: 461 APP--SSSYG 468
Score = 31.6 bits (70), Expect = 6.0
Identities = 25/81 (30%), Positives = 32/81 (38%), Gaps = 14/81 (17%)
Frame = -2
Query: 524 PSLSFGFPKIND-----SAPLPAFNPGGTPSIFARAPSDIAPAEFTFGA---------GP 387
PS +G P ++ S P P+FN PS APS A + + A GP
Sbjct: 133 PSSKYGAPPVSSYLPPASGPAPSFN--SAPSSSYAAPSQSASSGGPYPAAAPRPSSSYGP 190
Query: 386 NGSCPPPQPTPTPPNPNGDYG 324
S P P P P+ YG
Sbjct: 191 PASRPSSSYGPPPSRPSQSYG 211
>dbj|BAC28996.1| unnamed protein product [Mus musculus] gi|26339114|dbj|BAC33228.1|
unnamed protein product [Mus musculus]
gi|26352245|dbj|BAC39759.1| unnamed protein product [Mus
musculus] gi|28502816|gb|AAH47201.1| Unknown (protein
for MGC:56754) [Mus musculus]
Length = 242
Score = 38.1 bits (87), Expect = 0.064
Identities = 25/59 (42%), Positives = 27/59 (45%)
Frame = -2
Query: 503 PKINDSAPLPAFNPGGTPSIFARAPSDIAPAEFTFGAGPNGSCPPPQPTPTPPNPNGDY 327
P N SAP PA P G P PS AP+ FG P G P PT PP P G +
Sbjct: 39 PWSNPSAP-PAM-PSGLP------PSSAAPSTVPFGPVPTGMYPSMPPTGPPPGPPGPF 89
Score = 32.3 bits (72), Expect = 3.5
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Frame = -2
Query: 527 PPSLSFGFPKINDSAPLPAFNP---GGTPSIFARAPSDIAPAEFTFGAGPNGSCPPP--- 366
PP++ G P + + F P G PS+ P P F P SCPPP
Sbjct: 46 PPAMPSGLPPSSAAPSTVPFGPVPTGMYPSMPPTGPPPGPPGPFP---PPGPSCPPPGVP 102
Query: 365 --QPTPTPPNPNGDYGWMTFGQGRLP 294
P P P G Y LP
Sbjct: 103 YPAPAVPGPGPTGPYATPNMPMPELP 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,968,020
Number of Sequences: 1393205
Number of extensions: 11425509
Number of successful extensions: 72242
Number of sequences better than 10.0: 347
Number of HSP's better than 10.0 without gapping: 44627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63361
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
