Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004371A_C01 KMC004371A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20797.1| contains EST AU173803(R3795)~integral membrane p... 100 2e-20
ref|NP_197408.1| putative protein; protein id: At5g19070.1 [Arab... 91 1e-17
ref|NP_171825.1| hypothetical protein; protein id: At1g03260.1 [... 80 2e-14
gb|AAC38377.1| EscC [Escherichia coli] 37 0.18
pir||I80311 sepC protein - Escherichia coli gi|886477|emb|CAA902... 37 0.18
>dbj|BAC20797.1| contains EST AU173803(R3795)~integral membrane protein-like [Oryza
sativa (japonica cultivar-group)]
Length = 269
Score = 100 bits (248), Expect = 2e-20
Identities = 49/84 (58%), Positives = 65/84 (77%)
Frame = -1
Query: 586 VTHGWSEFSKTRWAFIVFGLVVSVVLMVCVTKVAKSALDKALAENEDIDGLTSSPELPIV 407
VTHGWSE S TRW I+ G ++SVVL+VCVT++AKS+L+KALAEN D P+LP+V
Sbjct: 191 VTHGWSEISTTRWILIISGFILSVVLIVCVTRIAKSSLEKALAENGD----AGIPQLPVV 246
Query: 406 AETSSDLSHPLIIKIDPTDENHEK 335
A + SDL PL+I+ID ++E+HEK
Sbjct: 247 A-SPSDLQQPLVIRIDTSNEDHEK 269
>ref|NP_197408.1| putative protein; protein id: At5g19070.1 [Arabidopsis thaliana]
Length = 262
Score = 90.9 bits (224), Expect = 1e-17
Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 6/88 (6%)
Frame = -1
Query: 586 VTHGWSEFSKTRWAFIVFGLVVSVVLMVCVTKVAKSALDKALAEN--EDIDGLTSSPELP 413
VTH WSEFS RWAF++ LV+SV+LMVCVTKVAK AL KALAE+ + + + + PEL
Sbjct: 173 VTHKWSEFSPGRWAFLISSLVISVILMVCVTKVAKDALRKALAEHGGDMNEAVAALPELT 232
Query: 412 IVAETSSDLSHPLIIKID---PTDE-NH 341
+ + S+DL+ PL+IKID P D+ NH
Sbjct: 233 VTDDASTDLNEPLLIKIDAQQPQDQVNH 260
>ref|NP_171825.1| hypothetical protein; protein id: At1g03260.1 [Arabidopsis
thaliana] gi|25406732|pir||A86164 protein F15K9.14
[imported] - Arabidopsis thaliana
gi|3850582|gb|AAC72122.1| F15K9.14 [Arabidopsis
thaliana]
Length = 269
Score = 80.1 bits (196), Expect = 2e-14
Identities = 40/82 (48%), Positives = 60/82 (72%), Gaps = 3/82 (3%)
Frame = -1
Query: 586 VTHGWSEFSKTRWAFIVFGLVVSVVLMVCVTKVAKSALDKALAEN-EDIDGLTS--SPEL 416
+THGW E S RW ++ G+ ++V+L++C+T+VAKS+LDKALAEN ++DG + + L
Sbjct: 188 ITHGWHEVSVFRWVIMMVGVALAVILIICITRVAKSSLDKALAENGTELDGKKNDDASVL 247
Query: 415 PIVAETSSDLSHPLIIKIDPTD 350
PI AE DL PL+I+IDP++
Sbjct: 248 PI-AEPPPDLQEPLVIRIDPSN 268
>gb|AAC38377.1| EscC [Escherichia coli]
Length = 512
Score = 37.0 bits (84), Expect = 0.18
Identities = 27/95 (28%), Positives = 43/95 (44%), Gaps = 5/95 (5%)
Frame = -1
Query: 523 VSVVLMVCVTKVAKSALDKALAENEDIDGLTSSPELPIVAETSSDLSHPLIIKIDPTDE- 347
+ L C + A S+L+K L +NE SSP I+ + +++ S P+ I D+
Sbjct: 8 IFTALFCCSAQAAPSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDF 67
Query: 346 ----NHEK*ISFLCKFFLLALKIPKAMLFHLTWSY 254
+EK + L K + L+HLTW Y
Sbjct: 68 SGEIKNEKPVKVLEKL---------SKLYHLTWYY 93
>pir||I80311 sepC protein - Escherichia coli gi|886477|emb|CAA90274.1| SepC
[Escherichia coli]
Length = 512
Score = 37.0 bits (84), Expect = 0.18
Identities = 27/95 (28%), Positives = 43/95 (44%), Gaps = 5/95 (5%)
Frame = -1
Query: 523 VSVVLMVCVTKVAKSALDKALAENEDIDGLTSSPELPIVAETSSDLSHPLIIKIDPTDE- 347
+ L C + A S+L+K L +NE SSP I+ + +++ S P+ I D+
Sbjct: 8 IFTALFCCSAQAAPSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDF 67
Query: 346 ----NHEK*ISFLCKFFLLALKIPKAMLFHLTWSY 254
+EK + L K + L+HLTW Y
Sbjct: 68 SGEIKNEKPVKVLEKL---------SKLYHLTWYY 93
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,168,708
Number of Sequences: 1393205
Number of extensions: 9470173
Number of successful extensions: 21030
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21019
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
