Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004369A_C01 KMC004369A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01495 hypothetical protein F17O7.19 - Arabidopsis thaliana... 98 8e-20
ref|NP_177185.2| unknown protein; protein id: At1g70280.1, suppo... 98 8e-20
gb|AAF87138.1|AC002423_3 T23E23.5 [Arabidopsis thaliana] 81 1e-14
ref|NP_173800.2| unknown protein; protein id: At1g23880.1, suppo... 81 1e-14
ref|NP_196993.1| putative protein; protein id: At5g14890.1 [Arab... 54 2e-06
>pir||T01495 hypothetical protein F17O7.19 - Arabidopsis thaliana
gi|3176691|gb|AAC18814.1| Contains homology to
serine/threonine protein kinase gb|X99618 from
Mycobacterium tuberculosis. ESTs gb|F14403, gb|F14404,
and gb|N96730 come from this gene. [Arabidopsis
thaliana]
Length = 493
Score = 98.2 bits (243), Expect = 8e-20
Identities = 60/121 (49%), Positives = 73/121 (59%), Gaps = 19/121 (15%)
Frame = -2
Query: 627 FMSKDAEKMQQLRQSRAFYSSGWDGDL----QQQQRHHHRHQYS-----------SSVPH 493
FMSKDAEKMQQLRQSRAFYSS WD + QQQQ+ H +HQ+ SS+PH
Sbjct: 370 FMSKDAEKMQQLRQSRAFYSS-WDAEFPNQQQQQQKQHQKHQHQQQQQQQHRRHYSSIPH 428
Query: 492 TYYEQSHETTNEIVFGAVQEQD--RNQESVIKHVEYGGSLFEH--NNIRPRMSSLGYAHK 325
TYYEQ E +NEIVFGAVQEQ R + K +E G + + N+ R S+ Y +
Sbjct: 429 TYYEQDSEKSNEIVFGAVQEQSSKRVAKPKPKPIESGDQMNNNTQQNLHYRSHSVSYPYG 488
Query: 324 Y 322
Y
Sbjct: 489 Y 489
>ref|NP_177185.2| unknown protein; protein id: At1g70280.1, supported by cDNA:
gi_17065223 [Arabidopsis thaliana]
gi|17065224|gb|AAL32766.1| Unknown protein [Arabidopsis
thaliana] gi|21387163|gb|AAM47985.1| unknown protein
[Arabidopsis thaliana]
Length = 447
Score = 98.2 bits (243), Expect = 8e-20
Identities = 60/121 (49%), Positives = 73/121 (59%), Gaps = 19/121 (15%)
Frame = -2
Query: 627 FMSKDAEKMQQLRQSRAFYSSGWDGDL----QQQQRHHHRHQYS-----------SSVPH 493
FMSKDAEKMQQLRQSRAFYSS WD + QQQQ+ H +HQ+ SS+PH
Sbjct: 324 FMSKDAEKMQQLRQSRAFYSS-WDAEFPNQQQQQQKQHQKHQHQQQQQQQHRRHYSSIPH 382
Query: 492 TYYEQSHETTNEIVFGAVQEQD--RNQESVIKHVEYGGSLFEH--NNIRPRMSSLGYAHK 325
TYYEQ E +NEIVFGAVQEQ R + K +E G + + N+ R S+ Y +
Sbjct: 383 TYYEQDSEKSNEIVFGAVQEQSSKRVAKPKPKPIESGDQMNNNTQQNLHYRSHSVSYPYG 442
Query: 324 Y 322
Y
Sbjct: 443 Y 443
>gb|AAF87138.1|AC002423_3 T23E23.5 [Arabidopsis thaliana]
Length = 493
Score = 80.9 bits (198), Expect = 1e-14
Identities = 48/82 (58%), Positives = 57/82 (68%), Gaps = 5/82 (6%)
Frame = -2
Query: 630 PFMSKDA-EKMQQLRQSRAFYSSGWDGDLQQQQRHHHR---HQYSSSVPHTYYEQSHETT 463
PFMSKDA EKMQQLRQSRA Y S LQ+QQ+ H+ H++ S++P+T YEQS E T
Sbjct: 398 PFMSKDATEKMQQLRQSRALYRSLDAEFLQEQQQEKHQQYHHRHHSTIPYTLYEQSSEKT 457
Query: 462 NEIVFGAVQEQDR-NQESVIKH 400
NEIVFG QEQD+ N I H
Sbjct: 458 NEIVFGPGQEQDQMNTHQNIHH 479
>ref|NP_173800.2| unknown protein; protein id: At1g23880.1, supported by cDNA:
gi_18700090, supported by cDNA: gi_20856012 [Arabidopsis
thaliana] gi|18700091|gb|AAL77657.1| At1g23880/T23E23_8
[Arabidopsis thaliana] gi|20856013|gb|AAM26643.1|
At1g23880/T23E23_8 [Arabidopsis thaliana]
Length = 545
Score = 80.9 bits (198), Expect = 1e-14
Identities = 48/82 (58%), Positives = 57/82 (68%), Gaps = 5/82 (6%)
Frame = -2
Query: 630 PFMSKDA-EKMQQLRQSRAFYSSGWDGDLQQQQRHHHR---HQYSSSVPHTYYEQSHETT 463
PFMSKDA EKMQQLRQSRA Y S LQ+QQ+ H+ H++ S++P+T YEQS E T
Sbjct: 450 PFMSKDATEKMQQLRQSRALYRSLDAEFLQEQQQEKHQQYHHRHHSTIPYTLYEQSSEKT 509
Query: 462 NEIVFGAVQEQDR-NQESVIKH 400
NEIVFG QEQD+ N I H
Sbjct: 510 NEIVFGPGQEQDQMNTHQNIHH 531
>ref|NP_196993.1| putative protein; protein id: At5g14890.1 [Arabidopsis thaliana]
gi|11357718|pir||T51434 hypothetical protein F2G14_10 -
Arabidopsis thaliana gi|9755656|emb|CAC01808.1| putative
protein [Arabidopsis thaliana]
Length = 733
Score = 53.9 bits (128), Expect = 2e-06
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = -2
Query: 606 KMQQLRQSRAFYSSGWDGDLQQQQRHHHRHQYSSSVPHTYYEQSHETTNEIVFGAVQEQD 427
+ Q Q+R++Y Q +++Q +V T + + NEIVFGAVQEQD
Sbjct: 375 RAQGTNQNRSYY----------QDYDQYQNQQKRNVNDTASFEDNREKNEIVFGAVQEQD 424
Query: 426 -RNQESVIKHVEYGGSLFEHNNIRPRMSSLGYA 331
R + VIK V++ ++ + N+RPR++ +GY+
Sbjct: 425 GRREAMVIKAVDFNEAINDQRNLRPRINYMGYS 457
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,025,974
Number of Sequences: 1393205
Number of extensions: 10934453
Number of successful extensions: 34737
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 29296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32942
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
