Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004367A_C02 KMC004367A_c02
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D96619 protein T30E16.9 [imported] - Arabidopsis thaliana g... 94 2e-18
ref|NP_564744.1| kinesin-related protein; protein id: At1g59540.... 94 2e-18
gb|AAK62792.1|AC027036_13 kinesin motor protein (kin2), putative... 94 2e-18
ref|NP_228987.1| chromosome segregation SMC protein, putative [T... 42 0.006
gb|AAH38314.1| Similar to homer, neuronal immediate early gene, ... 40 0.027
>pir||D96619 protein T30E16.9 [imported] - Arabidopsis thaliana
gi|8778739|gb|AAF79747.1|AC009317_6 T30E16.9 [Arabidopsis
thaliana]
Length = 888
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/90 (51%), Positives = 65/90 (72%)
Frame = -3
Query: 410 ERCESLERELLLLKDERDSLLLKFSESSEKLATVSRQKEKALQDLNTEVQRRENLEGEVK 231
E E L +E+ LK+ERDSL K S+S+++L ++ KE AL+DLN EV+RR+++E E+K
Sbjct: 794 ESHEKLIKEVQFLKEERDSLDRKISQSTQRLRVIASDKENALKDLNVEVKRRKDMEEEIK 853
Query: 230 KFSAAFACRQKSLISFHSEVKTKFEKLRAQ 141
S AFA R KS +SFHSE+K+K +KL Q
Sbjct: 854 HISIAFATRHKSFVSFHSEIKSKMQKLTTQ 883
>ref|NP_564744.1| kinesin-related protein; protein id: At1g59540.1, supported by
cDNA: gi_6526974 [Arabidopsis thaliana]
gi|25455762|pir||T52425 kinesin-like protein [imported]
- Arabidopsis thaliana gi|6526975|dbj|BAA88112.1|
kinesin-like protein [Arabidopsis thaliana]
gi|6526979|dbj|BAA88114.1| kinesin-like protein
[Arabidopsis thaliana]
Length = 823
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/90 (51%), Positives = 65/90 (72%)
Frame = -3
Query: 410 ERCESLERELLLLKDERDSLLLKFSESSEKLATVSRQKEKALQDLNTEVQRRENLEGEVK 231
E E L +E+ LK+ERDSL K S+S+++L ++ KE AL+DLN EV+RR+++E E+K
Sbjct: 729 ESHEKLIKEVQFLKEERDSLDRKISQSTQRLRVIASDKENALKDLNVEVKRRKDMEEEIK 788
Query: 230 KFSAAFACRQKSLISFHSEVKTKFEKLRAQ 141
S AFA R KS +SFHSE+K+K +KL Q
Sbjct: 789 HISIAFATRHKSFVSFHSEIKSKMQKLTTQ 818
>gb|AAK62792.1|AC027036_13 kinesin motor protein (kin2), putative [Arabidopsis thaliana]
Length = 807
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/90 (51%), Positives = 65/90 (72%)
Frame = -3
Query: 410 ERCESLERELLLLKDERDSLLLKFSESSEKLATVSRQKEKALQDLNTEVQRRENLEGEVK 231
E E L +E+ LK+ERDSL K S+S+++L ++ KE AL+DLN EV+RR+++E E+K
Sbjct: 713 ESHEKLIKEVQFLKEERDSLDRKISQSTQRLRVIASDKENALKDLNVEVKRRKDMEEEIK 772
Query: 230 KFSAAFACRQKSLISFHSEVKTKFEKLRAQ 141
S AFA R KS +SFHSE+K+K +KL Q
Sbjct: 773 HISIAFATRHKSFVSFHSEIKSKMQKLTTQ 802
>ref|NP_228987.1| chromosome segregation SMC protein, putative [Thermotoga maritima]
gi|7462812|pir||A72287 hypothetical protein TM1182 -
Thermotoga maritima (strain MSB8)
gi|4981731|gb|AAD36257.1|AE001774_14 chromosome
segregation SMC protein, putative [Thermotoga maritima]
Length = 1170
Score = 42.0 bits (97), Expect = 0.006
Identities = 25/93 (26%), Positives = 49/93 (51%), Gaps = 2/93 (2%)
Frame = -3
Query: 443 GETAYSKNDLTERCESLERELLLLKDERDSLLLKFSESSEKLATVSRQKEKALQDLNTEV 264
GET DL +R + E ++L + E + +F E S ++ + +++K ++LN
Sbjct: 399 GETL---EDLEKRRKITENQILTRRRELEDKKNEFKEISRRVEELDEEEKKLTEELNAVR 455
Query: 263 QRRENLEGEVKKFSAAFACRQKSL--ISFHSEV 171
+R E +EGE+++ + ++K L I F E+
Sbjct: 456 ERLEEIEGEIRRVNLEIDAKEKRLREIQFEKEM 488
Score = 35.0 bits (79), Expect = 0.67
Identities = 36/145 (24%), Positives = 67/145 (45%)
Frame = -3
Query: 575 EQQKEFHERMNIIMTSLELSENSTTTEQERNPSCSCGYKGSDLGGETAYSKNDLTERCES 396
EQ+ E ER I EL+ T E +N + +L +++ +K L+E S
Sbjct: 675 EQEMEETERQ-IAEKRDELASLKTEQENLKNQEALVQRELFELSRKSSSTKTVLSEILRS 733
Query: 395 LERELLLLKDERDSLLLKFSESSEKLATVSRQKEKALQDLNTEVQRRENLEGEVKKFSAA 216
+ + L++E ++L E K ++ ++EK ++++ Q RENL+ + ++S
Sbjct: 734 INQ----LQEEVENLEKLLVEYRAKEEGLNARREKIFEEIDELKQNRENLQRSLTEYSEE 789
Query: 215 FACRQKSLISFHSEVKTKFEKLRAQ 141
+K L E+ K LRA+
Sbjct: 790 LEKEKKIL----DELNEKIFTLRAE 810
>gb|AAH38314.1| Similar to homer, neuronal immediate early gene, 2 [Mus musculus]
Length = 170
Score = 39.7 bits (91), Expect = 0.027
Identities = 31/90 (34%), Positives = 47/90 (51%), Gaps = 4/90 (4%)
Frame = -3
Query: 401 ESLERELLLLKDERDSLLLKFSESSEKLATVSRQKEKALQDLNTEVQRR-ENLEGEV--K 231
E +R+ + +DE D L K E E+ + ++R+KEK NT+++RR E LE EV K
Sbjct: 25 EQWKRQFSICRDENDRLRSKIEELEEQCSEINREKEK-----NTQLKRRIEELESEVRDK 79
Query: 230 KFSAAFACRQKSLI-SFHSEVKTKFEKLRA 144
+ +Q +I SE + EKL A
Sbjct: 80 EMELKDLRKQSEIIPQLMSECEYVSEKLEA 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,017,702
Number of Sequences: 1393205
Number of extensions: 7702547
Number of successful extensions: 25432
Number of sequences better than 10.0: 301
Number of HSP's better than 10.0 without gapping: 23948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25342
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
