Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004357A_C01 KMC004357A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60528|MUC1_MESAU Mucin 1 precursor gi|1353410|gb|AAB53965.1|... 36 0.35
ref|NP_003804.1| a disintegrin and metalloproteinase domain 21 p... 33 2.3
gb|AAC52042.1| ADAM 21; testis-specific metalloprotease-like mem... 33 2.3
gb|AAB94620.1| ATP7B [Ovis aries] 32 5.1
sp|Q9XT50|AT7B_SHEEP Copper-transporting ATPase 2 (Copper pump 2... 32 5.1
>sp|Q60528|MUC1_MESAU Mucin 1 precursor gi|1353410|gb|AAB53965.1| mucin
Length = 676
Score = 35.8 bits (81), Expect = 0.35
Identities = 30/92 (32%), Positives = 46/92 (49%), Gaps = 7/92 (7%)
Frame = -1
Query: 552 SPDGNPSKKSGQEQHPNFTSPPQVSSGTMVYVGALDQSQISSATTESNAIAGIVSITISI 373
+P GN ++ S +HP +PP VSS + + + + +S A S+ A VS+ +S
Sbjct: 409 TPVGNGTQSSVPSRHPVTPTPPAVSSNSTIALSTYYSTALSPAF--SSHAAPQVSVGVSF 466
Query: 372 WLLCHH---HLF*VL----SSNYYFHQQFSQN 298
+LL H H F SSNYY Q+ +N
Sbjct: 467 FLLSFHIWNHQFNSSLEDPSSNYY--QELKRN 496
>ref|NP_003804.1| a disintegrin and metalloproteinase domain 21 preproprotein [Homo
sapiens] gi|14194447|sp|Q9UKJ8|AD21_HUMAN ADAM 21
precursor (A disintegrin and metalloproteinase domain
21) gi|5882231|gb|AAD55255.1|AF158644_1
metalloproteinase-disintegrin [Homo sapiens]
Length = 722
Score = 33.1 bits (74), Expect = 2.3
Identities = 28/77 (36%), Positives = 38/77 (48%), Gaps = 8/77 (10%)
Frame = -3
Query: 454 CLRSKSNIK--CNNRIQCYCG------HCQHNHLYLALVSSSPLLSSKF*LLLPSAIFSK 299
CL N+K CNN+ C+CG +CQH Y + S P S+K + LP +
Sbjct: 634 CLPETCNMKGICNNKHHCHCGYGWSPPYCQHRG-YGGSIDSGP-ASAKRGVFLPLIVIPS 691
Query: 298 LGS*VTLLFNLVGSYVY 248
L S +T LF VG +Y
Sbjct: 692 L-SVLTFLFT-VGLLMY 706
>gb|AAC52042.1| ADAM 21; testis-specific metalloprotease-like membrane protein
[Homo sapiens]
Length = 542
Score = 33.1 bits (74), Expect = 2.3
Identities = 28/77 (36%), Positives = 38/77 (48%), Gaps = 8/77 (10%)
Frame = -3
Query: 454 CLRSKSNIK--CNNRIQCYCG------HCQHNHLYLALVSSSPLLSSKF*LLLPSAIFSK 299
CL N+K CNN+ C+CG +CQH Y + S P S+K + LP +
Sbjct: 454 CLPETCNMKGICNNKHHCHCGYGWSPPYCQHRG-YGGSIDSGP-ASAKRGVFLPLIVIPS 511
Query: 298 LGS*VTLLFNLVGSYVY 248
L S +T LF VG +Y
Sbjct: 512 L-SVLTFLFT-VGLLMY 526
>gb|AAB94620.1| ATP7B [Ovis aries]
Length = 1444
Score = 32.0 bits (71), Expect = 5.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 525 SGQEQHPNFTSPPQVSSGTMVYVGALDQSQISSATTESNAIAGIVSITISI 373
+G E + P Q ++GT+ VG QS + S +++ GIVSI +S+
Sbjct: 37 NGYEDDLDGVCPSQTAAGTISIVGMTCQSCVKSIEGRVSSLKGIVSIKVSL 87
>sp|Q9XT50|AT7B_SHEEP Copper-transporting ATPase 2 (Copper pump 2) (Wilson
disease-associated protein homolog)
gi|5081417|gb|AAD39371.1|AF118225_1 ATP7B protein [Ovis
aries]
Length = 1505
Score = 32.0 bits (71), Expect = 5.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 525 SGQEQHPNFTSPPQVSSGTMVYVGALDQSQISSATTESNAIAGIVSITISI 373
+G E + P Q ++GT+ VG QS + S +++ GIVSI +S+
Sbjct: 98 NGYEDDLDGVCPSQTAAGTISIVGMTCQSCVKSIEGRVSSLKGIVSIKVSL 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,957,839
Number of Sequences: 1393205
Number of extensions: 9738992
Number of successful extensions: 23236
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 22427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23235
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
