Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004351A_C01 KMC004351A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JC7336 zinc-finger protein - Arabidopsis thaliana gi|891853... 80 2e-14
ref|NP_194178.1| Zinc finger protein, Zim; protein id: At4g24470... 80 2e-14
dbj|BAC42792.1| unknown protein [Arabidopsis thaliana] 70 2e-11
gb|AAK68757.1| Unknown protein [Arabidopsis thaliana] gi|1797869... 70 2e-11
ref|NP_566676.1| GATA zinc finger protein; protein id: At3g21175... 70 2e-11
>pir||JC7336 zinc-finger protein - Arabidopsis thaliana
gi|8918531|dbj|BAA97678.1| ZIM [Arabidopsis thaliana]
Length = 309
Score = 80.1 bits (196), Expect = 2e-14
Identities = 40/68 (58%), Positives = 46/68 (66%), Gaps = 6/68 (8%)
Frame = -3
Query: 643 TPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNHEQSHA--PPEQVGE----GNDLNC 482
TPMMRRGPSGPR+LCNACGLFWANRGTLRDLS++ E A P+ G N+LN
Sbjct: 224 TPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAANNLNT 283
Query: 481 RTATPSHH 458
A+ H
Sbjct: 284 EAASVEEH 291
>ref|NP_194178.1| Zinc finger protein, Zim; protein id: At4g24470.1, supported by
cDNA: 20769., supported by cDNA: gi_8918530 [Arabidopsis
thaliana] gi|7487328|pir||T09910 hypothetical protein
T22A6.300 - Arabidopsis thaliana
gi|5051789|emb|CAB45082.1| putative protein [Arabidopsis
thaliana] gi|7269297|emb|CAB79357.1| putative protein
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679.1| ZIM
[Arabidopsis thaliana] gi|21554169|gb|AAM63248.1| ZIM
[Arabidopsis thaliana]
Length = 309
Score = 80.1 bits (196), Expect = 2e-14
Identities = 40/68 (58%), Positives = 46/68 (66%), Gaps = 6/68 (8%)
Frame = -3
Query: 643 TPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNHEQSHA--PPEQVGE----GNDLNC 482
TPMMRRGPSGPR+LCNACGLFWANRGTLRDLS++ E A P+ G N+LN
Sbjct: 224 TPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAANNLNT 283
Query: 481 RTATPSHH 458
A+ H
Sbjct: 284 EAASVEEH 291
>dbj|BAC42792.1| unknown protein [Arabidopsis thaliana]
Length = 123
Score = 70.1 bits (170), Expect = 2e-11
Identities = 33/53 (62%), Positives = 37/53 (69%)
Frame = -3
Query: 643 TPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNHEQSHAPPEQVGEGNDLN 485
TPMMRRGP GPR+LCNACGL WAN+GTLRDLS+ PP Q + LN
Sbjct: 55 TPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK-------VPPPQTPQHLSLN 100
>gb|AAK68757.1| Unknown protein [Arabidopsis thaliana] gi|17978695|gb|AAL47341.1|
unknown protein [Arabidopsis thaliana]
Length = 295
Score = 70.1 bits (170), Expect = 2e-11
Identities = 33/53 (62%), Positives = 37/53 (69%)
Frame = -3
Query: 643 TPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNHEQSHAPPEQVGEGNDLN 485
TPMMRRGP GPR+LCNACGL WAN+GTLRDLS+ PP Q + LN
Sbjct: 227 TPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK-------VPPPQTPQHLSLN 272
>ref|NP_566676.1| GATA zinc finger protein; protein id: At3g21175.1, supported by
cDNA: 12996. [Arabidopsis thaliana]
gi|9280218|dbj|BAB01708.1|
emb|CAB45082.1~gene_id:MXL8.2~similar to unknown protein
[Arabidopsis thaliana]
Length = 297
Score = 70.1 bits (170), Expect = 2e-11
Identities = 33/53 (62%), Positives = 37/53 (69%)
Frame = -3
Query: 643 TPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNHEQSHAPPEQVGEGNDLN 485
TPMMRRGP GPR+LCNACGL WAN+GTLRDLS+ PP Q + LN
Sbjct: 229 TPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK-------VPPPQTPQHLSLN 274
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,294,892
Number of Sequences: 1393205
Number of extensions: 11551075
Number of successful extensions: 25590
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 24453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25577
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
