Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004346A_C01 KMC004346A_c01
(430 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN15115.1| antigen B membrane protein [Boophilus microplus] 30 5.3
gb|AAK32151.1| retinoblastoma protein 1 [Pan troglodytes] 30 9.0
sp|P06400|RB_HUMAN Retinoblastoma-associated protein (PP110) (P1... 30 9.0
prf||1312364A nuclear phosphoprotein 30 9.0
gb|AAN64133.1| retinoblastoma 1 (including osteosarcoma) [Homo s... 30 9.0
>gb|AAN15115.1| antigen B membrane protein [Boophilus microplus]
Length = 978
Score = 30.4 bits (67), Expect = 5.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 176 CILYWICDHECFSCNSMKPFNACVQLMLCVCWKY 75
C+ + CDH CF S +P N +++ C +Y
Sbjct: 549 CVTFIYCDHGCFRSASNRPINWGKPMVMSGCQRY 582
>gb|AAK32151.1| retinoblastoma protein 1 [Pan troglodytes]
Length = 882
Score = 29.6 bits (65), Expect = 9.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 129 TVTTETFMIANPIQDTYGSCFY---FLLQYVNSSDSCTRVFSVHPTL 260
T T F P++ T S FY + L Y+ + C R+ S HP L
Sbjct: 584 TQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPEL 630
>sp|P06400|RB_HUMAN Retinoblastoma-associated protein (PP110) (P105-RB) (RB)
gi|71864|pir||RBHU retinoblastoma-associated protein -
human gi|190946|gb|AAA69806.1| retinoblastoma-associated
protein gi|190963|gb|AAA69808.1| retinoblastoma
suceptibility protein gi|292421|gb|AAA53483.1|
retinoblastoma susceptibility protein
gi|521212|gb|AAA53484.1| retinoblastoma susceptibility
protein gi|793995|gb|AAB59465.1| retinoblastoma
suspectibility protein gi|24660140|gb|AAH39060.1|
Similar to retinoblastoma 1 (including osteosarcoma)
[Homo sapiens] gi|26252120|gb|AAH40540.1| Similar to
retinoblastoma 1 (including osteosarcoma) [Homo sapiens]
Length = 928
Score = 29.6 bits (65), Expect = 9.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 129 TVTTETFMIANPIQDTYGSCFY---FLLQYVNSSDSCTRVFSVHPTL 260
T T F P++ T S FY + L Y+ + C R+ S HP L
Sbjct: 630 TQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPEL 676
>prf||1312364A nuclear phosphoprotein
Length = 928
Score = 29.6 bits (65), Expect = 9.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 129 TVTTETFMIANPIQDTYGSCFY---FLLQYVNSSDSCTRVFSVHPTL 260
T T F P++ T S FY + L Y+ + C R+ S HP L
Sbjct: 630 TQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPEL 676
>gb|AAN64133.1| retinoblastoma 1 (including osteosarcoma) [Homo sapiens]
Length = 928
Score = 29.6 bits (65), Expect = 9.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 129 TVTTETFMIANPIQDTYGSCFY---FLLQYVNSSDSCTRVFSVHPTL 260
T T F P++ T S FY + L Y+ + C R+ S HP L
Sbjct: 630 TQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPEL 676
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,251,607
Number of Sequences: 1393205
Number of extensions: 7124764
Number of successful extensions: 17738
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17735
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
