Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004341A_C01 KMC004341A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64473.1| unknown [Arabidopsis thaliana] 112 2e-24
ref|NP_566554.1| expressed protein; protein id: At3g16560.1, sup... 112 2e-24
emb|CAD40673.1| OSJNBb0118P14.11 [Oryza sativa (japonica cultiva... 96 2e-19
gb|AAO65883.1| putative protein phosphatase 2C [Oryza sativa (ja... 75 5e-13
ref|NP_180455.1| unknown protein; protein id: At2g28890.1, suppo... 74 1e-12
>gb|AAM64473.1| unknown [Arabidopsis thaliana]
Length = 493
Score = 112 bits (281), Expect = 2e-24
Identities = 52/76 (68%), Positives = 66/76 (86%)
Frame = -1
Query: 521 SNDEAVKLVESYILSNPYGDPAKFLIEQLVVRAADSAGFSMEELMNIPAGRRRKYHDDVT 342
SN+EA+ LV S++ SNP GDPAKFL+E+LV +AA AGF++EEL N+PAGRRR+YHDDVT
Sbjct: 415 SNEEAIGLVHSFVSSNPSGDPAKFLLERLVAKAAARAGFTLEELTNVPAGRRRRYHDDVT 474
Query: 341 VMVVMLGMNQRTSKAS 294
+MV+ LG +QRTSKAS
Sbjct: 475 IMVITLGTDQRTSKAS 490
>ref|NP_566554.1| expressed protein; protein id: At3g16560.1, supported by cDNA:
249756. [Arabidopsis thaliana]
gi|11994610|dbj|BAB02747.1| contains similarity to
protein phosphatase-2c~gene_id:MGL6.2 [Arabidopsis
thaliana] gi|22531239|gb|AAM97123.1| expressed protein
[Arabidopsis thaliana]
Length = 493
Score = 112 bits (281), Expect = 2e-24
Identities = 52/76 (68%), Positives = 66/76 (86%)
Frame = -1
Query: 521 SNDEAVKLVESYILSNPYGDPAKFLIEQLVVRAADSAGFSMEELMNIPAGRRRKYHDDVT 342
SN+EA+ LV S++ SNP GDPAKFL+E+LV +AA AGF++EEL N+PAGRRR+YHDDVT
Sbjct: 415 SNEEAIGLVHSFVSSNPSGDPAKFLLERLVAKAAARAGFTLEELTNVPAGRRRRYHDDVT 474
Query: 341 VMVVMLGMNQRTSKAS 294
+MV+ LG +QRTSKAS
Sbjct: 475 IMVITLGTDQRTSKAS 490
>emb|CAD40673.1| OSJNBb0118P14.11 [Oryza sativa (japonica cultivar-group)]
Length = 520
Score = 96.3 bits (238), Expect = 2e-19
Identities = 46/76 (60%), Positives = 58/76 (75%)
Frame = -1
Query: 521 SNDEAVKLVESYILSNPYGDPAKFLIEQLVVRAADSAGFSMEELMNIPAGRRRKYHDDVT 342
SNDE V+LV ++ NP GDPAK+LIEQL+++AA A + EELM IP G RRKYHDDVT
Sbjct: 442 SNDEVVQLVYQFMHDNPIGDPAKYLIEQLLLKAAKEAALTAEELMRIPVGSRRKYHDDVT 501
Query: 341 VMVVMLGMNQRTSKAS 294
++V++LG QRT AS
Sbjct: 502 IIVIILGNAQRTMTAS 517
>gb|AAO65883.1| putative protein phosphatase 2C [Oryza sativa (japonica
cultivar-group)]
Length = 639
Score = 75.1 bits (183), Expect = 5e-13
Identities = 34/66 (51%), Positives = 49/66 (73%)
Frame = -1
Query: 521 SNDEAVKLVESYILSNPYGDPAKFLIEQLVVRAADSAGFSMEELMNIPAGRRRKYHDDVT 342
+N+EAV VE +I + P GDPA+ L+E+++ RAA+ AG EL+ IP G RR+YHDDV+
Sbjct: 565 TNEEAVAQVEMFIATTPEGDPAQHLVEEVLFRAANKAGMDFHELIEIPHGDRRRYHDDVS 624
Query: 341 VMVVML 324
V+V+ L
Sbjct: 625 VIVISL 630
>ref|NP_180455.1| unknown protein; protein id: At2g28890.1, supported by cDNA:
gi_17644154, supported by cDNA: gi_20465372 [Arabidopsis
thaliana] gi|25408021|pir||B84690 hypothetical protein
At2g28890 [imported] - Arabidopsis thaliana
gi|3927836|gb|AAC79593.1| unknown protein [Arabidopsis
thaliana] gi|17644155|gb|AAL38775.1| unknown protein
[Arabidopsis thaliana] gi|20465373|gb|AAM20090.1|
unknown protein [Arabidopsis thaliana]
Length = 654
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = -1
Query: 521 SNDEAVKLVESYILSNPYGDPAKFLIEQLVVRAADSAGFSMEELMNIPAGRRRKYHDDVT 342
+N+EAV VE +I P GDPA+ L+++L+ RAA AG EL+ IP G RR+YHDDV+
Sbjct: 580 TNEEAVSEVELFITLQPEGDPAQHLVQELLFRAAKKAGMDFHELLEIPQGERRRYHDDVS 639
Query: 341 VMVVML 324
++V+ L
Sbjct: 640 IVVISL 645
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,523,290
Number of Sequences: 1393205
Number of extensions: 7819295
Number of successful extensions: 15870
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 15533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15862
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
