Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004339A_C01 KMC004339A_c01
(390 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01942.1| gb|AAD15386.1~gene_id:MMP21.2~similar to unknown... 56 7e-08
ref|NP_181673.1| unknown protein; protein id: At2g41420.1 [Arabi... 44 1e-05
ref|NP_565739.1| expressed protein; protein id: At2g32190.1, sup... 48 3e-05
ref|NP_563734.1| expressed protein; protein id: At1g05340.1, sup... 48 3e-05
ref|NP_565740.1| expressed protein; protein id: At2g32210.1, sup... 47 4e-05
>dbj|BAB01942.1| gb|AAD15386.1~gene_id:MMP21.2~similar to unknown protein
[Arabidopsis thaliana] gi|21593174|gb|AAM65123.1|
unknown [Arabidopsis thaliana]
Length = 72
Score = 55.8 bits (133), Expect(2) = 7e-08
Identities = 20/36 (55%), Positives = 23/36 (63%)
Frame = -3
Query: 316 MVPHPSVPRENPLARGDGFWKGCCAGLCCCCALDCC 209
MV P ++GDGFWKGCCA +CCCC LD C
Sbjct: 36 MVGDPPAAAVETKSKGDGFWKGCCAAICCCCVLDAC 71
Score = 20.8 bits (42), Expect(2) = 7e-08
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -2
Query: 389 VGQSNPPSSYLNTIPPPVGYSHPTD----GPPP 303
V + + SS T PPP+GY PT G PP
Sbjct: 11 VEKPSQTSSGPYTSPPPIGY--PTRDAMVGDPP 41
>ref|NP_181673.1| unknown protein; protein id: At2g41420.1 [Arabidopsis thaliana]
gi|7487447|pir||T02437 hypothetical protein At2g41420
[imported] - Arabidopsis thaliana
gi|20197423|gb|AAM15069.1| unknown protein [Arabidopsis
thaliana] gi|27808506|gb|AAO24533.1| At2g41420
[Arabidopsis thaliana]
Length = 98
Score = 44.3 bits (103), Expect(2) = 1e-05
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 322 PPMVP-HPSVPRENPLARGDGFWKGCCAGLCCCCALDCC 209
PP P +P P+ GF +GC A LCCCC LD C
Sbjct: 59 PPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDAC 97
Score = 25.0 bits (53), Expect(2) = 1e-05
Identities = 12/31 (38%), Positives = 14/31 (44%), Gaps = 3/31 (9%)
Frame = -2
Query: 383 QSNPPSSYLNTIPPPVGY---SHPTDGPPPK 300
Q PP Y PP GY +P G PP+
Sbjct: 15 QGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQ 45
>ref|NP_565739.1| expressed protein; protein id: At2g32190.1, supported by cDNA:
40344. [Arabidopsis thaliana] gi|25408217|pir||A84730
hypothetical protein At2g32190 [imported] - Arabidopsis
thaliana gi|4263700|gb|AAD15386.1| expressed protein
[Arabidopsis thaliana] gi|21593591|gb|AAM65558.1|
unknown [Arabidopsis thaliana]
gi|26451539|dbj|BAC42867.1| unknown protein [Arabidopsis
thaliana] gi|28827664|gb|AAO50676.1| unknown protein
[Arabidopsis thaliana]
Length = 71
Score = 48.1 bits (113), Expect = 3e-05
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 17/59 (28%)
Frame = -3
Query: 334 AIPTPPM-----------------VPHPSVPRENPLARGDGFWKGCCAGLCCCCALDCC 209
A PTPP+ + H +V ++GDGF KGC A +CCCC LD C
Sbjct: 12 AYPTPPVSTGPYMTPPPLGYPTSDISHATVAPVETKSKGDGFLKGCLAAMCCCCVLDAC 70
>ref|NP_563734.1| expressed protein; protein id: At1g05340.1, supported by cDNA:
20380., supported by cDNA: gi_13430463, supported by
cDNA: gi_15810660 [Arabidopsis thaliana]
gi|25406839|pir||C86188 hypothetical protein [imported]
- Arabidopsis thaliana gi|2388562|gb|AAB71443.1| EST
gb|ATTS0295 comes from this gene. [Arabidopsis
thaliana] gi|13430464|gb|AAK25854.1|AF360144_1 unknown
protein [Arabidopsis thaliana]
gi|15810661|gb|AAL07255.1| unknown protein [Arabidopsis
thaliana] gi|21554110|gb|AAM63190.1| unknown
[Arabidopsis thaliana]
Length = 72
Score = 47.8 bits (112), Expect = 3e-05
Identities = 21/48 (43%), Positives = 27/48 (55%), Gaps = 8/48 (16%)
Frame = -3
Query: 328 PTPPMVPHPSVPRENPLA--------RGDGFWKGCCAGLCCCCALDCC 209
P PP+ + P +A +GDGF+KGC A +CCCCALD C
Sbjct: 24 PPPPIGYPTNQPSHGSVAQGKVETKSKGDGFFKGCLAAMCCCCALDIC 71
>ref|NP_565740.1| expressed protein; protein id: At2g32210.1, supported by cDNA:
31665., supported by cDNA: gi_13272416, supported by
cDNA: gi_20465358 [Arabidopsis thaliana]
gi|25408220|pir||C84730 hypothetical protein At2g32210
[imported] - Arabidopsis thaliana
gi|4263698|gb|AAD15384.1| expressed protein [Arabidopsis
thaliana] gi|13272417|gb|AAK17147.1|AF325079_1 unknown
protein [Arabidopsis thaliana]
gi|18389222|gb|AAL67054.1| unknown protein [Arabidopsis
thaliana] gi|20465359|gb|AAM20083.1| unknown protein
[Arabidopsis thaliana] gi|21618272|gb|AAM67322.1|
unknown [Arabidopsis thaliana]
Length = 71
Score = 47.4 bits (111), Expect = 4e-05
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 17/59 (28%)
Frame = -3
Query: 334 AIPTPPM-----------------VPHPSVPRENPLARGDGFWKGCCAGLCCCCALDCC 209
A PTPP+ H +V ++GDGF KGC A +CCCC LD C
Sbjct: 12 AYPTPPVSTGPYVAPPPLGYPTNDTSHATVATVETKSKGDGFLKGCLAAMCCCCVLDAC 70
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,251,286
Number of Sequences: 1393205
Number of extensions: 11374194
Number of successful extensions: 47500
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 36833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45929
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
