Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004338A_C01 KMC004338A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_569013.1| oligopeptidase A; protein id: At5g65620.1, supp... 221 4e-57
ref|NP_568232.1| oligopeptidase A - like protein; protein id: At... 218 5e-56
pir||T49985 oligopeptidase A-like protein - Arabidopsis thaliana... 209 2e-53
ref|NP_484923.1| oligopeptidase A [Nostoc sp. PCC 7120] gi|25319... 183 1e-45
ref|NP_681971.1| oligopeptidase A [Thermosynechococcus elongatus... 177 7e-44
>ref|NP_569013.1| oligopeptidase A; protein id: At5g65620.1, supported by cDNA:
gi_15028226 [Arabidopsis thaliana]
gi|15028227|gb|AAK76610.1| putative oligopeptidase A
[Arabidopsis thaliana] gi|23297000|gb|AAN13220.1|
putative oligopeptidase A [Arabidopsis thaliana]
Length = 791
Score = 221 bits (563), Expect = 4e-57
Identities = 105/124 (84%), Positives = 115/124 (92%)
Frame = -2
Query: 547 HSKYVPGGSESIYDVDRRVFERTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS 368
H+KYVPGG ESIYDVD+RV +TQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS
Sbjct: 664 HTKYVPGGPESIYDVDQRVSVKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS 723
Query: 367 ADAFSAFEDVGLDNSKAVKETGHKFRETILALGGGKEPLEVFVQFRGREPTPDALLRHNG 188
ADAFSAFED GLD+ KAVKETG +FR TILALGGGK PL+VFV+FRGREP+P+ LLRHNG
Sbjct: 724 ADAFSAFEDAGLDDIKAVKETGQRFRNTILALGGGKAPLKVFVEFRGREPSPEPLLRHNG 783
Query: 187 LVAA 176
L+AA
Sbjct: 784 LLAA 787
>ref|NP_568232.1| oligopeptidase A - like protein; protein id: At5g10540.1, supported
by cDNA: gi_15293088 [Arabidopsis thaliana]
gi|15293089|gb|AAK93655.1| putative oligopeptidase A
[Arabidopsis thaliana] gi|26983900|gb|AAN86202.1|
putative oligopeptidase A [Arabidopsis thaliana]
Length = 701
Score = 218 bits (554), Expect = 5e-56
Identities = 102/124 (82%), Positives = 116/124 (93%)
Frame = -2
Query: 547 HSKYVPGGSESIYDVDRRVFERTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS 368
H+KY+PGG+E+IY+VD+RV +TQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS
Sbjct: 576 HTKYMPGGAETIYEVDQRVSIKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS 635
Query: 367 ADAFSAFEDVGLDNSKAVKETGHKFRETILALGGGKEPLEVFVQFRGREPTPDALLRHNG 188
ADAFSAFED GLD+ KAVKETG +FR TILALGGGK PL+VFV+FRGREP+P+ LLRHNG
Sbjct: 636 ADAFSAFEDAGLDDIKAVKETGQRFRNTILALGGGKAPLKVFVEFRGREPSPEPLLRHNG 695
Query: 187 LVAA 176
L+AA
Sbjct: 696 LLAA 699
>pir||T49985 oligopeptidase A-like protein - Arabidopsis thaliana
gi|7671449|emb|CAB89389.1| oligopeptidase A-like protein
[Arabidopsis thaliana]
Length = 723
Score = 209 bits (531), Expect = 2e-53
Identities = 102/136 (75%), Positives = 116/136 (85%), Gaps = 12/136 (8%)
Frame = -2
Query: 547 HSKYVPGGSESIYDVDRRVFERTQVIPPLPEDRFLCSFSHIFA------------GGYAA 404
H+KY+PGG+E+IY+VD+RV +TQVIPPLPEDRFLCSFSHIFA GGYAA
Sbjct: 586 HTKYMPGGAETIYEVDQRVSIKTQVIPPLPEDRFLCSFSHIFAVCFTCSPSHVLSGGYAA 645
Query: 403 GYYSYKWAEVLSADAFSAFEDVGLDNSKAVKETGHKFRETILALGGGKEPLEVFVQFRGR 224
GYYSYKWAEVLSADAFSAFED GLD+ KAVKETG +FR TILALGGGK PL+VFV+FRGR
Sbjct: 646 GYYSYKWAEVLSADAFSAFEDAGLDDIKAVKETGQRFRNTILALGGGKAPLKVFVEFRGR 705
Query: 223 EPTPDALLRHNGLVAA 176
EP+P+ LLRHNGL+AA
Sbjct: 706 EPSPEPLLRHNGLLAA 721
>ref|NP_484923.1| oligopeptidase A [Nostoc sp. PCC 7120] gi|25319703|pir||AE1916
oligopeptidase A [imported] - Nostoc sp. (strain PCC
7120) gi|17130225|dbj|BAB72837.1| oligopeptidase A
[Nostoc sp. PCC 7120]
Length = 702
Score = 183 bits (464), Expect = 1e-45
Identities = 82/122 (67%), Positives = 101/122 (82%)
Frame = -2
Query: 547 HSKYVPGGSESIYDVDRRVFERTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS 368
HS+Y PGG E+ DV RV ++T V+PPLPED FLC+F HIFAGGYAAGYYSYKWAEVLS
Sbjct: 577 HSRYRPGGQETAADVRHRVAQKTTVLPPLPEDAFLCAFGHIFAGGYAAGYYSYKWAEVLS 636
Query: 367 ADAFSAFEDVGLDNSKAVKETGHKFRETILALGGGKEPLEVFVQFRGREPTPDALLRHNG 188
ADAF+AFED GL++ A+K TG ++R+T+LALGG K P+EVF FRGREP+ +LL+HNG
Sbjct: 637 ADAFAAFEDAGLEDEAAIKATGRRYRDTVLALGGSKHPMEVFAAFRGREPSTTSLLKHNG 696
Query: 187 LV 182
L+
Sbjct: 697 LL 698
>ref|NP_681971.1| oligopeptidase A [Thermosynechococcus elongatus BP-1]
gi|22294905|dbj|BAC08733.1| oligopeptidase A
[Thermosynechococcus elongatus BP-1]
Length = 702
Score = 177 bits (449), Expect = 7e-44
Identities = 82/123 (66%), Positives = 99/123 (79%)
Frame = -2
Query: 547 HSKYVPGGSESIYDVDRRVFERTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS 368
H +Y PG E+ V RV + T ++PPLPED FLCSFSHIFAGGYAAGYYSY WAEVLS
Sbjct: 578 HHRYRPGEGETPQQVRDRVAQTTTILPPLPEDAFLCSFSHIFAGGYAAGYYSYLWAEVLS 637
Query: 367 ADAFSAFEDVGLDNSKAVKETGHKFRETILALGGGKEPLEVFVQFRGREPTPDALLRHNG 188
ADAF+AFEDVGLDN +A+ E G ++RET+LALGG + P+E+F FRGREP+ +ALLRH G
Sbjct: 638 ADAFAAFEDVGLDNEQAIAEMGRRYRETVLALGGSQAPMEIFKAFRGREPSTEALLRHRG 697
Query: 187 LVA 179
LV+
Sbjct: 698 LVS 700
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,809,352
Number of Sequences: 1393205
Number of extensions: 9918957
Number of successful extensions: 28655
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 27673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28525
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
