Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004330A_C01 KMC004330A_c01
(386 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB69314.1| putative cholesterol oxidase [Streptomyces averm... 35 0.18
ref|NP_701418.1| hypothetical protein [Plasmodium falciparum 3D7... 32 1.5
ref|NP_703640.1| hypothetical protein [Plasmodium falciparum 3D7... 32 2.5
gb|AAO53159.1| similar to Hypothetical ORF; Yml018cp [Saccharomy... 31 3.3
ref|XP_238661.1| hypothetical protein XP_238661 [Rattus norvegicus] 31 4.3
>dbj|BAB69314.1| putative cholesterol oxidase [Streptomyces avermitilis]
Length = 547
Score = 35.4 bits (80), Expect = 0.18
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +2
Query: 149 KSIHSKELEKKTTQQMKTKTRKQHSSTLQPFHVNRNWFQ*PRGDWYFRLRVCRRKVSAEY 328
+S + L + ++M TK + +STL+ +++++WF+ + DWY RV RR+ S
Sbjct: 166 RSYFEEVLPQVDAEEMYTKYFPRANSTLRVNNIDKSWFE--QTDWYSFARVSRRQAS--- 220
Query: 329 NCGL 340
N GL
Sbjct: 221 NAGL 224
>ref|NP_701418.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496584|gb|AAN36142.1|AE014844_53 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 289
Score = 32.3 bits (72), Expect = 1.5
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 49 YQYQNNVLKYDIVNLLKGRRLQAHHQFLQPTNCEINT*QRIRKKNNTTNENKNKKTAFFN 228
Y N +L YDI++++K A H + N IN I +++ EN N T F+
Sbjct: 71 YNTYNPILNYDILDIIKVYGRLAEHSKYESLNININ----INEQDVQVKENNNLFTKIFS 126
Query: 229 F 231
F
Sbjct: 127 F 127
>ref|NP_703640.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504879|emb|CAD51660.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 109
Score = 31.6 bits (70), Expect = 2.5
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -1
Query: 242 EMAAKLKNAVFLFLFSFVVLFFFL-ILCYVLISQFVGWRNW*WA*SLLPFKRFTMSYFNT 66
E K K LF F LFF L +L Y+ I FV ++ + ++ R + Y T
Sbjct: 23 EKQNKTKVLFISSLFPFFFLFFVLSLLSYIFIIFFVSLSSFLYIDDII-LLRIIVLYTMT 81
Query: 65 LF*Y*YQHQHIYI 27
L+ Y Y H +IYI
Sbjct: 82 LYIYKYIHIYIYI 94
>gb|AAO53159.1| similar to Hypothetical ORF; Yml018cp [Saccharomyces cerevisiae]
[Dictyostelium discoideum]
Length = 511
Score = 31.2 bits (69), Expect = 3.3
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 49 YQYQNNVLKYDIVNLLKGRRLQAHHQFLQPTNCEINT*QRIRKKNNTTNENKNKKT 216
Y+Y NNV Y+ N+++ L +IN + IR NN N N N +
Sbjct: 31 YEYNNNVNHYENNNIIENEELYI-------ITDDINNNKYIRNNNNNNNNNNNNNS 79
>ref|XP_238661.1| hypothetical protein XP_238661 [Rattus norvegicus]
Length = 356
Score = 30.8 bits (68), Expect = 4.3
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = +3
Query: 51 SISEQCIKI*HSKSLKGEEASSPSPIP 131
++ E+C+KI S L G EA S SPIP
Sbjct: 316 AVCEECLKIYLSSQLAGREALSSSPIP 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,981,281
Number of Sequences: 1393205
Number of extensions: 6509587
Number of successful extensions: 22283
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22177
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
