Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004324A_C01 KMC004324A_c01
(426 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC01441.1| putative fatty acid elongase [Zea mays] 97 5e-20
ref|NP_180232.1| putative beta-ketoacyl-CoA synthase; protein id... 95 2e-19
gb|AAL67132.1| putative beta-ketoacyl-CoA synthase [Arabidopsis ... 91 3e-18
ref|NP_171918.1| putative beta-ketoacyl-CoA synthase; protein id... 91 3e-18
gb|AAL99199.1| putative fatty acid elongase [Tropaeolum majus] 90 7e-18
>emb|CAC01441.1| putative fatty acid elongase [Zea mays]
Length = 513
Score = 97.1 bits (240), Expect = 5e-20
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = -3
Query: 424 RTWQIAFGSGFKCNSAVWRALRTINPAKEKSPWMDEIHQFPVDVPRVSAI 275
R WQIAFGSGFKCNSAVW+ALRT+NPAKEKSPWMDEI FPVDVP++S +
Sbjct: 461 RIWQIAFGSGFKCNSAVWKALRTVNPAKEKSPWMDEIDNFPVDVPKISKV 510
>ref|NP_180232.1| putative beta-ketoacyl-CoA synthase; protein id: At2g26640.1
[Arabidopsis thaliana] gi|25407838|pir||A84663 probable
beta-ketoacyl-CoA synthase [imported] - Arabidopsis
thaliana gi|2760830|gb|AAB95298.1| putative
beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
gi|28392937|gb|AAO41904.1| putative beta-ketoacyl-CoA
synthase [Arabidopsis thaliana]
gi|28973575|gb|AAO64112.1| putative beta-ketoacyl-CoA
synthase [Arabidopsis thaliana]
Length = 509
Score = 95.1 bits (235), Expect = 2e-19
Identities = 39/50 (78%), Positives = 47/50 (94%)
Frame = -3
Query: 424 RTWQIAFGSGFKCNSAVWRALRTINPAKEKSPWMDEIHQFPVDVPRVSAI 275
R WQIAFGSGFKCNS+VWRA+R++NP KEK+PWMDEIH+FPV+VP+VS I
Sbjct: 460 RIWQIAFGSGFKCNSSVWRAVRSVNPKKEKNPWMDEIHEFPVEVPKVSTI 509
>gb|AAL67132.1| putative beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
Length = 523
Score = 90.9 bits (224), Expect = 3e-18
Identities = 41/54 (75%), Positives = 47/54 (86%), Gaps = 4/54 (7%)
Frame = -3
Query: 424 RTWQIAFGSGFKCNSAVWRALRTINPAKEK----SPWMDEIHQFPVDVPRVSAI 275
RTWQIAFGSGFKCNSAVWRALRTI+P+KEK +PW+DEIH+FPV VPR S +
Sbjct: 463 RTWQIAFGSGFKCNSAVWRALRTIDPSKEKKKKTNPWIDEIHEFPVPVPRTSPV 516
>ref|NP_171918.1| putative beta-ketoacyl-CoA synthase; protein id: At1g04220.1
[Arabidopsis thaliana] gi|7488037|pir||T00951 probable
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
F20D22.1 - Arabidopsis thaliana
gi|3142289|gb|AAC16740.1| Strong similarity to
beta-keto-Coa synthase gb|U37088 from Simmondsia
chinensis. [Arabidopsis thaliana]
Length = 528
Score = 90.9 bits (224), Expect = 3e-18
Identities = 41/54 (75%), Positives = 47/54 (86%), Gaps = 4/54 (7%)
Frame = -3
Query: 424 RTWQIAFGSGFKCNSAVWRALRTINPAKEK----SPWMDEIHQFPVDVPRVSAI 275
RTWQIAFGSGFKCNSAVWRALRTI+P+KEK +PW+DEIH+FPV VPR S +
Sbjct: 468 RTWQIAFGSGFKCNSAVWRALRTIDPSKEKKKKTNPWIDEIHEFPVPVPRTSPV 521
>gb|AAL99199.1| putative fatty acid elongase [Tropaeolum majus]
Length = 503
Score = 89.7 bits (221), Expect = 7e-18
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = -3
Query: 424 RTWQIAFGSGFKCNSAVWRALRTINPAKEKSPWMDEIHQFPVDVP 290
R WQIAFGSGFKCNSAVW+ALR +NPA+EK+PWMDEIH FPV+VP
Sbjct: 457 RVWQIAFGSGFKCNSAVWKALRNVNPAEEKNPWMDEIHLFPVEVP 501
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,557,384
Number of Sequences: 1393205
Number of extensions: 7158902
Number of successful extensions: 15681
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 15374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15654
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
