Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004320A_C01 KMC004320A_c01
(691 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567315.1| coded for by A. thaliana cDNA N64969; protein i... 132 6e-30
gb|AAM64321.1| unknown [Arabidopsis thaliana] 132 6e-30
ref|NP_200755.1| putative protein; protein id: At5g59470.1 [Arab... 109 4e-23
ref|NP_608889.1| CG3792-PA [Drosophila melanogaster] gi|12229871... 55 1e-06
gb|EAA12192.1| agCP11260 [Anopheles gambiae str. PEST] 53 3e-06
>ref|NP_567315.1| coded for by A. thaliana cDNA N64969; protein id: At4g07390.1,
supported by cDNA: 2296., supported by cDNA: gi_18252960
[Arabidopsis thaliana] gi|18252961|gb|AAL62407.1|
unknown protein [Arabidopsis thaliana]
gi|21389665|gb|AAM48031.1| unknown protein [Arabidopsis
thaliana]
Length = 235
Score = 132 bits (331), Expect = 6e-30
Identities = 64/89 (71%), Positives = 76/89 (84%)
Frame = -2
Query: 690 ALYASQHAIFLCARIPQIWQNFSNRSTGELSF*TSFMNFGGSMVRVFTTIQENAPKSVLL 511
ALYASQHAIFL AR+PQIW+NF N+STGELSF T FMNF GS+VRVFT++QE AP S+L
Sbjct: 145 ALYASQHAIFLFARLPQIWKNFKNKSTGELSFLTFFMNFAGSIVRVFTSLQEKAPISILT 204
Query: 510 GYAIGVATNFTILSQIVLYQKPRAEKEKK 424
G+A+GV TN +IL+QI+LY KP A KEKK
Sbjct: 205 GFALGVVTNGSILTQILLYSKPAAAKEKK 233
>gb|AAM64321.1| unknown [Arabidopsis thaliana]
Length = 235
Score = 132 bits (331), Expect = 6e-30
Identities = 64/89 (71%), Positives = 76/89 (84%)
Frame = -2
Query: 690 ALYASQHAIFLCARIPQIWQNFSNRSTGELSF*TSFMNFGGSMVRVFTTIQENAPKSVLL 511
ALYASQHAIFL AR+PQIW+NF N+STGELSF T FMNF GS+VRVFT++QE AP S+L
Sbjct: 145 ALYASQHAIFLFARLPQIWKNFKNKSTGELSFLTFFMNFAGSIVRVFTSLQEKAPISILT 204
Query: 510 GYAIGVATNFTILSQIVLYQKPRAEKEKK 424
G+A+GV TN +IL+QI+LY KP A KEKK
Sbjct: 205 GFALGVVTNGSILTQILLYSKPAAAKEKK 233
>ref|NP_200755.1| putative protein; protein id: At5g59470.1 [Arabidopsis thaliana]
gi|12644539|sp|Q9LTI3|MPU1_ARATH Mannose-P-dolichol
utilization defect 1 protein homolog
gi|8885552|dbj|BAA97482.1| contains similarity to SL15
protein~gene_id:F2O15.15 [Arabidopsis thaliana]
Length = 239
Score = 109 bits (272), Expect = 4e-23
Identities = 56/94 (59%), Positives = 70/94 (73%), Gaps = 4/94 (4%)
Frame = -2
Query: 690 ALYASQHAIFLCARIPQIWQNFSNRSTGELSF*TSFMNFGGSMVRVFTTIQENAPKSVLL 511
ALYAS+H IFL ARIPQIW+NF N+STG+LSF T MNFGG++ RVFT+IQE AP S+LL
Sbjct: 145 ALYASKHLIFLSARIPQIWKNFRNKSTGQLSFLTCLMNFGGALARVFTSIQEKAPLSMLL 204
Query: 510 GYAIGVATNFTILSQIVLYQKPRAE----KEKKM 421
G + + TN I+SQI+LY+ E K KK+
Sbjct: 205 GIVLSIFTNGIIMSQILLYRSKGNEDKLVKSKKI 238
>ref|NP_608889.1| CG3792-PA [Drosophila melanogaster]
gi|12229871|sp|Q9VMW8|MPU1_DROME Mannose-P-dolichol
utilization defect 1 protein homolog
gi|10728573|gb|AAF52190.2| CG3792-PA [Drosophila
melanogaster] gi|28557601|gb|AAO45206.1| RE68138p
[Drosophila melanogaster]
Length = 252
Score = 54.7 bits (130), Expect = 1e-06
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = -2
Query: 666 IFLCARIPQIWQNFSNRSTGELSF*TSFMNFGGSMVRVFTTIQENAPKSVLLGYAIGVAT 487
I L ++ Q + N+ STG+LS T M F GS+ R+FT+IQE ++L +
Sbjct: 159 ILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSIQETGDFMIILTFIASTFA 218
Query: 486 NFTILSQIVLY-QKPRAEKEK 427
N IL Q++ Y KP K K
Sbjct: 219 NSVILGQLIYYWNKPAGVKVK 239
>gb|EAA12192.1| agCP11260 [Anopheles gambiae str. PEST]
Length = 234
Score = 53.1 bits (126), Expect = 3e-06
Identities = 26/71 (36%), Positives = 40/71 (55%)
Frame = -2
Query: 666 IFLCARIPQIWQNFSNRSTGELSF*TSFMNFGGSMVRVFTTIQENAPKSVLLGYAIGVAT 487
I L ++ Q + N+ N STG+LS T FM GS+ R+FT+IQE + +++ Y
Sbjct: 163 ILLLGKLSQAFTNYRNGSTGQLSAVTCFMLLAGSLARIFTSIQETGDQMMIITYGSSSFA 222
Query: 486 NFTILSQIVLY 454
N I Q++ Y
Sbjct: 223 NLVIALQMLYY 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,512,122
Number of Sequences: 1393205
Number of extensions: 12135452
Number of successful extensions: 29800
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 28560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29796
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
