Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004310A_C03 KMC004310A_c03
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN31908.1| unknown protein [Arabidopsis thaliana] 40 0.019
ref|NP_680222.1| hypothetical protein; protein id: At5g25754.1 [... 40 0.019
ref|NP_596260.1| hypothetical transmembrane protein [Schizosacch... 31 9.0
emb|CAC22671.1| possible surface antigen [Leishmania major] 31 9.0
>gb|AAN31908.1| unknown protein [Arabidopsis thaliana]
Length = 514
Score = 40.0 bits (92), Expect = 0.019
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = -1
Query: 310 GDYFLRQIVKLERVINEMDAIKME 239
GD+FLRQI KLE VIN+MD +K+E
Sbjct: 491 GDFFLRQIAKLEGVINDMDRVKLE 514
>ref|NP_680222.1| hypothetical protein; protein id: At5g25754.1 [Arabidopsis
thaliana] gi|22327070|ref|NP_680223.1| hypothetical
protein; protein id: At5g25757.1 [Arabidopsis thaliana]
Length = 514
Score = 40.0 bits (92), Expect = 0.019
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = -1
Query: 310 GDYFLRQIVKLERVINEMDAIKME 239
GD+FLRQI KLE VIN+MD +K+E
Sbjct: 491 GDFFLRQIAKLEGVINDMDRVKLE 514
>ref|NP_596260.1| hypothetical transmembrane protein [Schizosaccharomyces pombe]
gi|7688325|emb|CAB89880.1| hypothetical transmembrane
protein [Schizosaccharomyces pombe]
Length = 815
Score = 31.2 bits (69), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -2
Query: 261 RWTL*RWSELLPISSYIDF 205
RWT +W LLP+S+YI F
Sbjct: 26 RWTFNKWKALLPVSAYISF 44
>emb|CAC22671.1| possible surface antigen [Leishmania major]
Length = 182
Score = 31.2 bits (69), Expect = 9.0
Identities = 23/107 (21%), Positives = 41/107 (37%), Gaps = 17/107 (15%)
Frame = +3
Query: 225 WATTHSIFIASISLITLSSLTICRKK*SPESVGRL*TAQHESSSPSKQAEAITGVLKSSC 404
W+++ + S+SL+T+ + + S S T +E++S + SSC
Sbjct: 28 WSSSSAPAHGSVSLVTMPTAPSSKSSISSSSA----TGANETASTTSTTTNTVNTAASSC 83
Query: 405 VVQSKIICELGKVNL----TPNF-------------CNLRACAMCHA 494
V + + C N+ P + CN+ C CHA
Sbjct: 84 AVSNCVTCSSTNPNVCTTCNPGYAVDRLGQCMVVGSCNVAHCVTCHA 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,755,496
Number of Sequences: 1393205
Number of extensions: 8986669
Number of successful extensions: 18518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18516
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
