Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004302A_C01 KMC004302A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566623.1| expressed protein; protein id: At3g19000.1, sup... 135 2e-31
gb|AAM65669.1| unknown [Arabidopsis thaliana] 124 5e-28
ref|NP_566624.1| expressed protein; protein id: At3g19010.1, sup... 124 5e-28
ref|NP_196179.1| leucoanthocyanidin dioxygenase-like protein; pr... 93 2e-18
gb|AAM61665.1| leucoanthocyanidin dioxygenase-like protein [Arab... 93 2e-18
>ref|NP_566623.1| expressed protein; protein id: At3g19000.1, supported by cDNA:
36985., supported by cDNA: gi_20466683 [Arabidopsis
thaliana] gi|9280317|dbj|BAB01696.1| oxylase-like
protein [Arabidopsis thaliana]
gi|20466684|gb|AAM20659.1| unknown protein [Arabidopsis
thaliana] gi|23198196|gb|AAN15625.1| unknown protein
[Arabidopsis thaliana]
Length = 352
Score = 135 bits (341), Expect = 2e-31
Identities = 62/107 (57%), Positives = 82/107 (75%)
Frame = -2
Query: 468 SDGEWIRVKPIFNSFIINVGDMIQVWSNDAYESVEHRVMVNSEKDRFSIPFFLKPALYTD 289
SDG+WI VKPI ++ IIN+G+ IQVW+ND Y S EHRV+VN+ K+RFSIPFF P+ +
Sbjct: 245 SDGQWIPVKPISDALIINMGNCIQVWTNDEYWSAEHRVVVNTSKERFSIPFFFFPSHEAN 304
Query: 288 VKPLEELTDDKHPPIYRAINWGQFRTARMRSNFAKSNVENIQIYHFK 148
++PLEEL +++PP Y+ NWG+F +R RS+F K VENIQI HFK
Sbjct: 305 IEPLEELISEENPPCYKKYNWGKFFVSRNRSDFKKLEVENIQIDHFK 351
>gb|AAM65669.1| unknown [Arabidopsis thaliana]
Length = 349
Score = 124 bits (311), Expect = 5e-28
Identities = 53/108 (49%), Positives = 79/108 (73%)
Frame = -2
Query: 468 SDGEWIRVKPIFNSFIINVGDMIQVWSNDAYESVEHRVMVNSEKDRFSIPFFLKPALYTD 289
SDG W ++P+ N+ +IN+G+ +++W+ND Y S EHRV+VN+ ++R+SIPFFL P+ +
Sbjct: 240 SDGVWFPIRPVPNALVINIGNCMEIWTNDKYWSAEHRVVVNTTRERYSIPFFLLPSHDVE 299
Query: 288 VKPLEELTDDKHPPIYRAINWGQFRTARMRSNFAKSNVENIQIYHFKL 145
VKPLEEL ++PP Y+ WG+F +R RS+F K +ENIQI FK+
Sbjct: 300 VKPLEELVSPENPPRYKGYKWGKFYVSRNRSDFRKLEIENIQIDDFKV 347
>ref|NP_566624.1| expressed protein; protein id: At3g19010.1, supported by cDNA:
41506. [Arabidopsis thaliana] gi|9280318|dbj|BAB01697.1|
oxidase-like protein [Arabidopsis thaliana]
gi|27754245|gb|AAO22576.1| unknown protein [Arabidopsis
thaliana]
Length = 349
Score = 124 bits (311), Expect = 5e-28
Identities = 53/108 (49%), Positives = 79/108 (73%)
Frame = -2
Query: 468 SDGEWIRVKPIFNSFIINVGDMIQVWSNDAYESVEHRVMVNSEKDRFSIPFFLKPALYTD 289
SDG W ++P+ N+ +IN+G+ +++W+ND Y S EHRV+VN+ ++R+SIPFFL P+ +
Sbjct: 240 SDGVWFPIRPVPNALVINIGNCMEIWTNDKYWSAEHRVVVNTTRERYSIPFFLLPSHDVE 299
Query: 288 VKPLEELTDDKHPPIYRAINWGQFRTARMRSNFAKSNVENIQIYHFKL 145
VKPLEEL ++PP Y+ WG+F +R RS+F K +ENIQI FK+
Sbjct: 300 VKPLEELVSPENPPKYKGYKWGKFYVSRNRSDFRKLEIENIQIDDFKV 347
>ref|NP_196179.1| leucoanthocyanidin dioxygenase-like protein; protein id:
At5g05600.1, supported by cDNA: 13012., supported by
cDNA: gi_14532537 [Arabidopsis thaliana]
gi|10178137|dbj|BAB11549.1| leucoanthocyanidin
dioxygenase-like protein [Arabidopsis thaliana]
gi|14532538|gb|AAK63997.1| AT5g05600/MOP10_14
[Arabidopsis thaliana] gi|22137300|gb|AAM91495.1|
AT5g05600/MOP10_14 [Arabidopsis thaliana]
Length = 371
Score = 92.8 bits (229), Expect = 2e-18
Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Frame = -2
Query: 465 DGEWIRVKPIFNSFIINVGDMIQVWSNDAYESVEHRVMVNSEKDRFSIPFFLKPALYTDV 286
D WI VKP ++FI+N+GD IQ+ SN Y+SVEHRV+VNS+K+R S+ FF P +
Sbjct: 267 DDTWITVKPHPHAFIVNIGDQIQILSNSTYKSVEHRVIVNSDKERVSLAFFYNPKSDIPI 326
Query: 285 KPLEELTDDKHPPIYRAINWGQFRT-ARMRSNFAKSNVEN 169
+PL+EL +PP+Y + + Q+R R + KS+VE+
Sbjct: 327 QPLQELVSTHNPPLYPPMTFDQYRLFIRTQGPQGKSHVES 366
>gb|AAM61665.1| leucoanthocyanidin dioxygenase-like protein [Arabidopsis thaliana]
Length = 355
Score = 92.8 bits (229), Expect = 2e-18
Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Frame = -2
Query: 465 DGEWIRVKPIFNSFIINVGDMIQVWSNDAYESVEHRVMVNSEKDRFSIPFFLKPALYTDV 286
D WI VKP ++FI+N+GD IQ+ SN Y+SVEHRV+VNS+K+R S+ FF P +
Sbjct: 251 DDTWITVKPHPHAFIVNIGDQIQILSNSTYKSVEHRVIVNSDKERVSLAFFYNPKSDIPI 310
Query: 285 KPLEELTDDKHPPIYRAINWGQFRT-ARMRSNFAKSNVEN 169
+PL+EL +PP+Y + + Q+R R + KS+VE+
Sbjct: 311 QPLQELVSTHNPPLYPPMTFDQYRLFIRTQGPQGKSHVES 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,129,764
Number of Sequences: 1393205
Number of extensions: 7642230
Number of successful extensions: 19721
Number of sequences better than 10.0: 635
Number of HSP's better than 10.0 without gapping: 19221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19639
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
