Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004294A_C01 KMC004294A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196688.1| putative protein; protein id: At5g11270.1 [Arab... 124 9e-28
gb|AAN72028.1| putative protein [Arabidopsis thaliana] 124 9e-28
gb|AAO72604.1| unknown [Oryza sativa (japonica cultivar-group)] 114 9e-25
gb|EAA34927.1| predicted protein [Neurospora crassa] 35 0.54
sp|Q93352|HM36_CAEEL HOMEOBOX PROTEIN CEH-36 35 0.54
>ref|NP_196688.1| putative protein; protein id: At5g11270.1 [Arabidopsis thaliana]
gi|8953389|emb|CAB96662.1| putative protein [Arabidopsis
thaliana]
Length = 350
Score = 124 bits (310), Expect = 9e-28
Identities = 53/72 (73%), Positives = 66/72 (91%)
Frame = -2
Query: 514 IHTMQRSWSAPKRLKKAHVDTLERVYRRSKRPTNTMISSIVHVTNIPRRKVVKWFEDKRA 335
+H MQ+ WSA KR+KKAH++TLE+VYRRSKRPTN ++SSIV VTN+PR++V+KWFEDKRA
Sbjct: 276 VHVMQQRWSAQKRVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEDKRA 335
Query: 334 EDGVPDRRLPYQ 299
EDGVPD+R PYQ
Sbjct: 336 EDGVPDKRAPYQ 347
>gb|AAN72028.1| putative protein [Arabidopsis thaliana]
Length = 354
Score = 124 bits (310), Expect = 9e-28
Identities = 53/72 (73%), Positives = 66/72 (91%)
Frame = -2
Query: 514 IHTMQRSWSAPKRLKKAHVDTLERVYRRSKRPTNTMISSIVHVTNIPRRKVVKWFEDKRA 335
+H MQ+ WSA KR+KKAH++TLE+VYRRSKRPTN ++SSIV VTN+PR++V+KWFEDKRA
Sbjct: 280 VHVMQQRWSAQKRVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEDKRA 339
Query: 334 EDGVPDRRLPYQ 299
EDGVPD+R PYQ
Sbjct: 340 EDGVPDKRAPYQ 351
>gb|AAO72604.1| unknown [Oryza sativa (japonica cultivar-group)]
Length = 300
Score = 114 bits (284), Expect = 9e-25
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = -2
Query: 523 QVPIHTMQRSWSAPKRLKKAHVDTLERVYRRSKRPTNTMISSIVHVTNIPRRKVVKWFED 344
++P+H M WS+ KRLKK ++TLERVY R+KRPTNTMISSIV VT++PR+ +VKWFED
Sbjct: 217 ELPVHVMCAEWSSQKRLKKVQLETLERVYSRTKRPTNTMISSIVQVTSLPRKTIVKWFED 276
Query: 343 KRAEDGVPDRRLPYQRSTAEETA 275
+R +DGVPD R+ ++RS +E A
Sbjct: 277 RREQDGVPDHRVAFKRSLSETIA 299
>gb|EAA34927.1| predicted protein [Neurospora crassa]
Length = 653
Score = 35.0 bits (79), Expect = 0.54
Identities = 17/80 (21%), Positives = 40/80 (49%)
Frame = -2
Query: 514 IHTMQRSWSAPKRLKKAHVDTLERVYRRSKRPTNTMISSIVHVTNIPRRKVVKWFEDKRA 335
+H +++ P RL K V+ LER + ++ +P ++ + + ++ WF+++RA
Sbjct: 59 LHPSKQTEPKP-RLAKDEVELLEREFAKNPKPNTSLKRELAEQMGVEVPRINNWFQNRRA 117
Query: 334 EDGVPDRRLPYQRSTAEETA 275
++ + ++ A E A
Sbjct: 118 KEKQMRKTAEFEAQQARERA 137
>sp|Q93352|HM36_CAEEL HOMEOBOX PROTEIN CEH-36
Length = 254
Score = 35.0 bits (79), Expect = 0.54
Identities = 14/47 (29%), Positives = 28/47 (58%)
Frame = -2
Query: 469 KAHVDTLERVYRRSKRPTNTMISSIVHVTNIPRRKVVKWFEDKRAED 329
+ +D LE+V+R ++ P ++ N+P +V WF+++RA+D
Sbjct: 64 RGQLDQLEKVFRETQYPDVHRREALAKAINLPDGRVQVWFKNRRAKD 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,677,117
Number of Sequences: 1393205
Number of extensions: 9697542
Number of successful extensions: 22862
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 22110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22857
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
