Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004288A_C01 KMC004288A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84887.1|AF402606_1 homeodomain leucine zipper protein HDZ3... 135 4e-31
dbj|BAB18168.1| homeobox-leucine zipper protein [Zinnia elegans] 59 3e-08
ref|NP_186796.1| homeobox-leucine zipper protein HAT5 (HD-ZIP pr... 52 6e-06
gb|AAL57495.1|AF443621_1 homeodomain leucine zipper protein CPHB... 49 5e-05
gb|ZP_00019536.1| hypothetical protein [Chloroflexus aurantiacus] 34 1.2
>gb|AAK84887.1|AF402606_1 homeodomain leucine zipper protein HDZ3 [Phaseolus vulgaris]
Length = 224
Score = 135 bits (340), Expect = 4e-31
Identities = 67/84 (79%), Positives = 70/84 (82%)
Frame = -1
Query: 587 GSVGSAVVDEGSPQLVVDSVDSYFPADNYVECVVAPAAERVQSEEEDGSDDGRSYLDVFV 408
GSVGSAVVDEGSPQLVVDSVDSY PADN CV ER+QSEEEDGSDDGRSY+DVFV
Sbjct: 142 GSVGSAVVDEGSPQLVVDSVDSYLPADNPGGCV--GPVERIQSEEEDGSDDGRSYMDVFV 199
Query: 407 ISETEQQNHENGEGLNWWGNMYYV 336
+SETE QNHE GE L WW NMYYV
Sbjct: 200 VSETENQNHEEGEALVWWTNMYYV 223
>dbj|BAB18168.1| homeobox-leucine zipper protein [Zinnia elegans]
Length = 174
Score = 59.3 bits (142), Expect = 3e-08
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = -1
Query: 587 GSVGSAVVDEGSPQLVVDSVDSY-FP-ADNYVECVVAPAAERVQSEEEDGSDDGRSYLDV 414
GS GSAVVD+ +VDS DSY FP D+Y V PA + QSEE+DGSDDG++
Sbjct: 98 GSGGSAVVDDQDGPQLVDSGDSYNFPNDDDYPHEYVVPAVD--QSEEDDGSDDGQNRFQY 155
Query: 413 FVISETEQQNHENGEGLNWW 354
E +HE +GL WW
Sbjct: 156 ----TFETADHEEQDGLGWW 171
>ref|NP_186796.1| homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP
protein ATHB-1); protein id: At3g01470.1, supported by
cDNA: gi_16648821, supported by cDNA: gi_20466120
[Arabidopsis thaliana] gi|399900|sp|Q02283|HAT5_ARATH
Homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5)
(HD-ZIP protein ATHB-1) gi|99659|pir||S16325 homeotic
protein Athb-1 - Arabidopsis thaliana
gi|16329|emb|CAA41625.1| Athb-1 protein [Arabidopsis
thaliana] gi|6016706|gb|AAF01532.1|AC009325_2
homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5)
(HD-ZIP protein ATHB-1) [Arabidopsis thaliana]
gi|16648822|gb|AAL25601.1| AT3g01470/F4P13_2
[Arabidopsis thaliana] gi|20466121|gb|AAM19982.1|
AT3g01470/F4P13_2 [Arabidopsis thaliana]
Length = 272
Score = 52.0 bits (123), Expect = 6e-06
Identities = 32/79 (40%), Positives = 46/79 (57%)
Frame = -1
Query: 587 GSVGSAVVDEGSPQLVVDSVDSYFPADNYVECVVAPAAERVQSEEEDGSDDGRSYLDVFV 408
GSVGSAV+D+ +PQL +DS DSYFP+ + P + S D +D + DVFV
Sbjct: 203 GSVGSAVLDDDAPQL-LDSCDSYFPS-------IVPIQD--NSNASDHDNDRSCFADVFV 252
Query: 407 ISETEQQNHENGEGLNWWG 351
+ + +H +GE L +WG
Sbjct: 253 PTTSPSHDH-HGESLAFWG 270
>gb|AAL57495.1|AF443621_1 homeodomain leucine zipper protein CPHB-5 [Craterostigma
plantagineum]
Length = 285
Score = 48.9 bits (115), Expect = 5e-05
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = -1
Query: 587 GSVGSAVVD-EGSPQLVVDSVDSYFPADNYVECVVAPAAERVQSEEEDGSDDGRSYLDVF 411
GS GSAV+D +G QL+ DS DSYF D +C A A ++E+DGSD+G Y
Sbjct: 213 GSNGSAVMDGDGPQQLLDDSGDSYFENDEEYDCAAASLAA---AKEDDGSDEGGCYFTEA 269
Query: 410 VISETEQ 390
+ +E E+
Sbjct: 270 LAAEEEE 276
>gb|ZP_00019536.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 814
Score = 34.3 bits (77), Expect = 1.2
Identities = 25/74 (33%), Positives = 36/74 (47%)
Frame = +1
Query: 349 LPHQFNPSPFS*FCCSVSDITNTSK*LLPSSLPSSSSD*TLSAAGATTHST*LSAGKYES 528
LP + +PSP + +TNTS S + ++SS S ATT T G +
Sbjct: 706 LPREPDPSPTPTSTIYIPTVTNTSSPTPSSVITTTSSPTATSTPTATTSPT--VTGSPTA 763
Query: 529 TLSTTSWGLPSSTT 570
T S T+ G P++TT
Sbjct: 764 TTSPTATGSPTATT 777
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,394,583
Number of Sequences: 1393205
Number of extensions: 12028508
Number of successful extensions: 31744
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 29619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31509
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
