Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004275A_C01 KMC004275A_c01
(398 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09513.1| GMFP4 [Glycine max] 59 2e-12
pir||A86449 hypothetical protein F5D14.17 - Arabidopsis thaliana... 57 6e-08
ref|NP_564399.1| expressed protein; protein id: At1g32400.1, sup... 57 6e-08
dbj|BAC65018.1| P0498E12.14 [Oryza sativa (japonica cultivar-gro... 32 0.11
ref|NP_710482.1| outer membrane protein OmpA family [Leptospira ... 30 5.5
>gb|AAD09513.1| GMFP4 [Glycine max]
Length = 111
Score = 58.9 bits (141), Expect(2) = 2e-12
Identities = 26/28 (92%), Positives = 27/28 (95%)
Frame = -3
Query: 396 AWSTRMREKYGLDTSEFTYNPSESPRFQ 313
AWSTRMREKYGLDTSEFTYNPSES R+Q
Sbjct: 68 AWSTRMREKYGLDTSEFTYNPSESHRYQ 95
Score = 33.5 bits (75), Expect(2) = 2e-12
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -1
Query: 311 QVNSQPTEERSRCAIM 264
QVNSQPTEE SRCAIM
Sbjct: 96 QVNSQPTEEGSRCAIM 111
>pir||A86449 hypothetical protein F5D14.17 - Arabidopsis thaliana
gi|8920615|gb|AAF81337.1|AC007767_17 Contains similarity
to GMFP4 from Glycine max gb|U64915. ESTs gb|AV442477,
gb|AV441037, gb|AV534954, gb|AV560678 and gb|AV518757
come from this gene. [Arabidopsis thaliana]
Length = 252
Score = 57.0 bits (136), Expect = 6e-08
Identities = 27/37 (72%), Positives = 27/37 (72%)
Frame = -3
Query: 393 WSTRMREKYGLDTSEFTYNPSESPRFQPSELTAN*RK 283
WS RMREKYGLDTSEFTYNPSES RFQ N K
Sbjct: 210 WSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEK 246
>ref|NP_564399.1| expressed protein; protein id: At1g32400.1, supported by cDNA:
7849., supported by cDNA: gi_12248018, supported by
cDNA: gi_14326468 [Arabidopsis thaliana]
gi|12248019|gb|AAG50101.1|AF334723_1 unknown protein
[Arabidopsis thaliana]
gi|14326469|gb|AAK60280.1|AF385687_1 At1g32400/F5D14_22
[Arabidopsis thaliana] gi|21595337|gb|AAM66092.1|
unknown [Arabidopsis thaliana]
gi|25006245|dbj|BAC24019.1| tobamovirus multiplication
2A [Arabidopsis thaliana]
Length = 280
Score = 57.0 bits (136), Expect = 6e-08
Identities = 27/37 (72%), Positives = 27/37 (72%)
Frame = -3
Query: 393 WSTRMREKYGLDTSEFTYNPSESPRFQPSELTAN*RK 283
WS RMREKYGLDTSEFTYNPSES RFQ N K
Sbjct: 238 WSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEK 274
>dbj|BAC65018.1| P0498E12.14 [Oryza sativa (japonica cultivar-group)]
Length = 249
Score = 32.3 bits (72), Expect(2) = 0.11
Identities = 16/31 (51%), Positives = 19/31 (60%)
Frame = -3
Query: 396 AWSTRMREKYGLDTSEFTYNPSESPRFQPSE 304
AWS RMREKYG+DT F N + P+E
Sbjct: 213 AWSQRMREKYGVDT--FDPNRFQQATISPAE 241
Score = 22.7 bits (47), Expect(2) = 0.11
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 311 QVNSQPTEERSRCAIM 264
Q P E+R+RCAI+
Sbjct: 234 QATISPAEQRNRCAIL 249
>ref|NP_710482.1| outer membrane protein OmpA family [Leptospira interrogans serovar
lai str. 56601] gi|24193684|gb|AAN47500.1|AE011218_3
outer membrane protein OmpA family [Leptospira
interrogans serovar lai str. 56601]
Length = 589
Score = 30.4 bits (67), Expect = 5.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 338 THPSHQGSSQVNSQPTEERSRCAI 267
+H SHQG +VN TEER+R A+
Sbjct: 521 SHSSHQGDEEVNQVGTEERAREAL 544
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,402,120
Number of Sequences: 1393205
Number of extensions: 6429651
Number of successful extensions: 15478
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15468
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
