Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004273A_C01 KMC004273A_c01
(680 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA72009.1| invertase [Cichorium intybus] 201 1e-50
emb|CAC19366.1| fructan 1-exohydrolase I [Cichorium intybus] 197 1e-49
emb|CAA72062.1| fructosidase [Cichorium intybus] 189 3e-47
emb|CAC37922.1| fructan 1-exohydrolase IIa [Cichorium intybus] 187 9e-47
emb|CAC37923.1| fructan 1-exohydrolase IIb [Cichorium intybus] 187 9e-47
>emb|CAA72009.1| invertase [Cichorium intybus]
Length = 550
Score = 201 bits (510), Expect = 1e-50
Identities = 93/151 (61%), Positives = 121/151 (79%)
Frame = -2
Query: 676 LDAKRVDPQLLCSEESASKSGKLGPFGLSALASEDQREQTAVFFRIYKSSNKYLGLMCSD 497
LD VDPQL+CSE ASK GK GPFGL ALAS D REQTA+FFR+++ + +Y+ LMCSD
Sbjct: 395 LDPSWVDPQLICSENDASKKGKFGPFGLLALASSDLREQTAIFFRVFRKNGRYVVLMCSD 454
Query: 496 QSRSSLRKDLDKTTYGSFFEFDPNLKRISLRSLIDHSIIESFGEGGRVCITSRVYPLLAI 317
QSRSS++ ++K TYG+F + DP ISLR+LIDHSI+ESFG G+ CIT+RVYP LAI
Sbjct: 455 QSRSSMKNGIEKRTYGAFVDIDPQQDEISLRTLIDHSIVESFGGRGKTCITTRVYPTLAI 514
Query: 316 GKEAHLYVFNNGTQSVQISNLNAWCMKEAEV 224
G++A L+ FN+GT+SV+IS L+AW MK+A++
Sbjct: 515 GEQARLFAFNHGTESVEISELSAWSMKKAQM 545
>emb|CAC19366.1| fructan 1-exohydrolase I [Cichorium intybus]
Length = 568
Score = 197 bits (500), Expect = 1e-49
Identities = 94/151 (62%), Positives = 122/151 (80%)
Frame = -2
Query: 676 LDAKRVDPQLLCSEESASKSGKLGPFGLSALASEDQREQTAVFFRIYKSSNKYLGLMCSD 497
+D++ VDPQLLC++++ S SGK GPFG+ LAS++ EQTAVFFR++K NK+L LMCSD
Sbjct: 414 IDSEVVDPQLLCAQKNVSISGKFGPFGMLILASKNLTEQTAVFFRVFKGPNKFLVLMCSD 473
Query: 496 QSRSSLRKDLDKTTYGSFFEFDPNLKRISLRSLIDHSIIESFGEGGRVCITSRVYPLLAI 317
QSRSS+ +++DK+ YG+F + DP ++I LRSLIDHSI+ESFG G CITSRVYP LAI
Sbjct: 474 QSRSSIAQEVDKSIYGAFLDLDPLHEKIPLRSLIDHSIVESFGGEGIACITSRVYPKLAI 533
Query: 316 GKEAHLYVFNNGTQSVQISNLNAWCMKEAEV 224
++A LYVFNNGTQSV +S LNAW MK A++
Sbjct: 534 NEQAELYVFNNGTQSVTMSTLNAWSMKRAQI 564
>emb|CAA72062.1| fructosidase [Cichorium intybus]
Length = 581
Score = 189 bits (480), Expect = 3e-47
Identities = 90/159 (56%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Frame = -2
Query: 676 LDAKRVDPQLLCSEESASKSGKLGPFGLSALASEDQREQTAVFFRIYKSS-NKYLGLMCS 500
LD VDPQ LC+E SAS G LGPFGL A+AS+D +EQ+A+FFR++++ +Y LMCS
Sbjct: 420 LDTTLVDPQALCNERSASSRGALGPFGLLAMASKDLKEQSAIFFRVFQNQLGRYSVLMCS 479
Query: 499 DQSRSSLRKDLDKTTYGSFFEFDPNLKRISLRSLIDHSIIESFGEGGRVCITSRVYPLLA 320
D SRS++R ++D T+YG+F + DP + ISLR+LIDHSIIESFG GG+ CITSR+YP
Sbjct: 480 DLSRSTVRSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAGGKTCITSRIYPKFV 539
Query: 319 IGKEAHLYVFNNGTQSVQISNLNAWCMKEAEVGYQKNVR 203
+EAHL+VFNNGTQ+V+IS ++AW MK A+ ++V+
Sbjct: 540 NNEEAHLFVFNNGTQNVKISEMSAWSMKNAKFVVDQSVK 578
>emb|CAC37922.1| fructan 1-exohydrolase IIa [Cichorium intybus]
Length = 581
Score = 187 bits (476), Expect = 9e-47
Identities = 89/159 (55%), Positives = 121/159 (75%), Gaps = 1/159 (0%)
Frame = -2
Query: 676 LDAKRVDPQLLCSEESASKSGKLGPFGLSALASEDQREQTAVFFRIYKSS-NKYLGLMCS 500
LD VDPQ LC+E AS G LGPFGL A+AS+D +EQ+A+FFR++++ +Y LMCS
Sbjct: 420 LDTTLVDPQALCNERGASSRGALGPFGLLAMASKDLKEQSAIFFRVFQNQLGRYSVLMCS 479
Query: 499 DQSRSSLRKDLDKTTYGSFFEFDPNLKRISLRSLIDHSIIESFGEGGRVCITSRVYPLLA 320
D SRS++R ++D T+YG+F + DP + ISLR+LIDHSIIESFG GG+ CITSR+YP
Sbjct: 480 DLSRSTVRSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAGGKTCITSRIYPKFV 539
Query: 319 IGKEAHLYVFNNGTQSVQISNLNAWCMKEAEVGYQKNVR 203
+EAHL+VFNNGTQ+V+IS ++AW MK A+ ++V+
Sbjct: 540 NNEEAHLFVFNNGTQNVKISEMSAWSMKNAKFVVDQSVK 578
>emb|CAC37923.1| fructan 1-exohydrolase IIb [Cichorium intybus]
Length = 581
Score = 187 bits (476), Expect = 9e-47
Identities = 88/159 (55%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Frame = -2
Query: 676 LDAKRVDPQLLCSEESASKSGKLGPFGLSALASEDQREQTAVFFRIYKSS-NKYLGLMCS 500
LD VDPQ+LC+E AS G +GPFGL A+AS+D +EQ+A+FFR++++ +Y LMCS
Sbjct: 420 LDTTSVDPQVLCNERGASSRGAIGPFGLLAMASKDLKEQSAIFFRVFQNQLGRYSVLMCS 479
Query: 499 DQSRSSLRKDLDKTTYGSFFEFDPNLKRISLRSLIDHSIIESFGEGGRVCITSRVYPLLA 320
D SRS++R ++D T+YG+F + DP + ISLR+LIDHSIIESFG GG+ CITSR+YP
Sbjct: 480 DLSRSTVRSNIDTTSYGAFVDIDPKSEEISLRNLIDHSIIESFGAGGKTCITSRIYPQFV 539
Query: 319 IGKEAHLYVFNNGTQSVQISNLNAWCMKEAEVGYQKNVR 203
+EAHL+ FNNGTQ+V+IS ++AW MK A +NV+
Sbjct: 540 NNEEAHLFAFNNGTQNVKISKMSAWSMKNAAFVVDQNVK 578
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,032,728
Number of Sequences: 1393205
Number of extensions: 11614551
Number of successful extensions: 29070
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 28021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28777
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
