Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004268A_C01 KMC004268A_c01
(396 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB16441.1| OsRFC 37 kDa subunit [Oryza sativa (japonica cul... 82 1e-15
ref|NP_564148.1| putative replication factor; protein id: At1g21... 62 2e-09
pir||B86350 hypothetical protein F8K7.11 - Arabidopsis thaliana ... 62 2e-09
ref|XP_213598.1| similar to expressed sequence AU040575; similar... 56 9e-08
ref|NP_663455.1| expressed sequence AU040575; similar to CG8142 ... 55 3e-07
>dbj|BAB16441.1| OsRFC 37 kDa subunit [Oryza sativa (japonica cultivar-group)]
Length = 339
Score = 82.4 bits (202), Expect = 1e-15
Identities = 41/58 (70%), Positives = 44/58 (75%)
Frame = -3
Query: 388 DAIVEEKGTSDKQKARICKKLGEADKCLVDGADEYLQLLDVFSNTTKAFCDMPEGLSF 215
D IV D+QKARICKKLGEADKCLVDGADEYLQLLDV S T +A DMP+ L F
Sbjct: 282 DVIVNADDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 339
>ref|NP_564148.1| putative replication factor; protein id: At1g21690.1, supported by
cDNA: 115488., supported by cDNA: gi_15810342, supported
by cDNA: gi_17065121 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor
[Arabidopsis thaliana] gi|17065122|gb|AAL32715.1|
Similar replication factor C, 37-kDa subunit
[Arabidopsis thaliana] gi|21536935|gb|AAM61276.1|
putative replication factor [Arabidopsis thaliana]
Length = 339
Score = 62.0 bits (149), Expect = 2e-09
Identities = 33/57 (57%), Positives = 40/57 (69%), Gaps = 1/57 (1%)
Frame = -3
Query: 394 LFDAIVE-EKGTSDKQKARICKKLGEADKCLVDGADEYLQLLDVFSNTTKAFCDMPE 227
LFD + E + +D QKA+ICK L E DK LVDGADEYLQLLDV S+T A +M +
Sbjct: 281 LFDIVAEADSDITDMQKAKICKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQ 337
>pir||B86350 hypothetical protein F8K7.11 - Arabidopsis thaliana
gi|5263320|gb|AAD41422.1|AC007727_11 Similar to
gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities. [Arabidopsis thaliana]
Length = 319
Score = 62.0 bits (149), Expect = 2e-09
Identities = 33/57 (57%), Positives = 40/57 (69%), Gaps = 1/57 (1%)
Frame = -3
Query: 394 LFDAIVE-EKGTSDKQKARICKKLGEADKCLVDGADEYLQLLDVFSNTTKAFCDMPE 227
LFD + E + +D QKA+ICK L E DK LVDGADEYLQLLDV S+T A +M +
Sbjct: 261 LFDIVAEADSDITDMQKAKICKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQ 317
>ref|XP_213598.1| similar to expressed sequence AU040575; similar to CG8142 gene
product [Mus musculus] [Rattus norvegicus]
Length = 364
Score = 56.2 bits (134), Expect = 9e-08
Identities = 25/43 (58%), Positives = 34/43 (78%)
Frame = -3
Query: 394 LFDAIVEEKGTSDKQKARICKKLGEADKCLVDGADEYLQLLDV 266
L D+I+E++ SDKQK+ I +KL E DKCL DGADE+LQL+ +
Sbjct: 310 LHDSIIEDENLSDKQKSIITEKLAEVDKCLADGADEHLQLMSL 352
>ref|NP_663455.1| expressed sequence AU040575; similar to CG8142 gene product [Mus
musculus] gi|13097123|gb|AAH03335.1| Similar to
replication factor C (activator 1) 4 (37kD) [Mus
musculus]
Length = 364
Score = 54.7 bits (130), Expect = 3e-07
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = -3
Query: 394 LFDAIVEEKGTSDKQKARICKKLGEADKCLVDGADEYLQLLDV 266
L DAI+E + SDK K+ I +KL E DKCL DGADE+LQL+ +
Sbjct: 310 LHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSL 352
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,915,252
Number of Sequences: 1393205
Number of extensions: 5236009
Number of successful extensions: 12862
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12854
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
