Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004254A_C01 KMC004254A_c01
(413 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63495.1| arabinogalactan-protein [Arabidopsis thaliana] 62 1e-09
ref|NP_201236.1| arabinogalactan-protein (AGP1); protein id: At5... 62 1e-09
gb|AAK91454.1| AT5g64310/MSJ1_15 [Arabidopsis thaliana] gi|20147... 61 4e-09
gb|AAA66362.1| arabinogalactan-protein precursor 56 9e-08
ref|NP_569011.1| arabinogalactan-protein (AGP7); protein id: At5... 47 6e-05
>gb|AAM63495.1| arabinogalactan-protein [Arabidopsis thaliana]
Length = 131
Score = 62.4 bits (150), Expect = 1e-09
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = -1
Query: 401 PRKALSP--TATPVSPAVSPSSTEESPAAVPAAITPSSISGPPSEAPGPAANGAVLNRVA 228
P AL+P +A+P SP ++ S T +SPA ++PS+IS P+EAPGPA GAV N+ A
Sbjct: 61 PAAALTPESSASPPSPPLADSPTADSPA-----LSPSAISDSPTEAPGPAQGGAVSNKFA 115
Query: 227 VSGSAAIVIFAAALLM 180
GS A+++ AA L++
Sbjct: 116 SFGSVAVMLTAAVLVI 131
>ref|NP_201236.1| arabinogalactan-protein (AGP1); protein id: At5g64310.1, supported
by cDNA: 25423., supported by cDNA: gi_15215817,
supported by cDNA: gi_20147408, supported by cDNA:
gi_3883119 [Arabidopsis thaliana]
gi|3883120|gb|AAC77823.1| arabinogalactan-protein
[Arabidopsis thaliana]
Length = 131
Score = 62.4 bits (150), Expect = 1e-09
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = -1
Query: 401 PRKALSP--TATPVSPAVSPSSTEESPAAVPAAITPSSISGPPSEAPGPAANGAVLNRVA 228
P AL+P +A+P SP ++ S T +SPA ++PS+IS P+EAPGPA GAV N+ A
Sbjct: 61 PAAALTPESSASPPSPPLADSPTADSPA-----LSPSAISDSPTEAPGPAQGGAVSNKFA 115
Query: 227 VSGSAAIVIFAAALLM 180
GS A+++ AA L++
Sbjct: 116 SFGSVAVMLTAAVLVI 131
>gb|AAK91454.1| AT5g64310/MSJ1_15 [Arabidopsis thaliana] gi|20147409|gb|AAM10414.1|
AT5g64310/MSJ1_15 [Arabidopsis thaliana]
Length = 131
Score = 60.8 bits (146), Expect = 4e-09
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 15/92 (16%)
Frame = -1
Query: 410 AAPPRKALSPTATP-VSPAVSPSST--------------EESPAAVPAAITPSSISGPPS 276
A P+K +P P VSP+ SP++ +SP A A++PS+IS P+
Sbjct: 40 APSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPSPPLADSPTADSTALSPSAISDSPT 99
Query: 275 EAPGPAANGAVLNRVAVSGSAAIVIFAAALLM 180
EAPGPA GAV N+ A GS A+++ AA L++
Sbjct: 100 EAPGPAQGGAVSNKFASFGSVAVMLTAAVLVI 131
>gb|AAA66362.1| arabinogalactan-protein precursor
Length = 132
Score = 56.2 bits (134), Expect = 9e-08
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 15/91 (16%)
Frame = -1
Query: 410 AAPPRKALSPTATPV---SPAVSPSSTE-ESPAAVPAAITPS-----------SISGPPS 276
A+PP ++P + P S A SPS + SP A P A TP+ SI P+
Sbjct: 41 ASPPTAVVTPVSAPSQSPSTAASPSESPLASPPAPPTADTPAFAPSGGVALPPSIGSAPA 100
Query: 275 EAPGPAANGAVLNRVAVSGSAAIVIFAAALL 183
+P + N A LNRVAV+GSA + IFAA+L+
Sbjct: 101 GSPTSSPNAASLNRVAVAGSAVVAIFAASLM 131
>ref|NP_569011.1| arabinogalactan-protein (AGP7); protein id: At5g65390.1, supported
by cDNA: 108595., supported by cDNA: gi_15215665,
supported by cDNA: gi_20334897 [Arabidopsis thaliana]
gi|9759619|dbj|BAB11561.1| gene_id:MNA5.12~unknown
protein [Arabidopsis thaliana]
gi|15215666|gb|AAK91378.1| AT5g65390/MNA5_12
[Arabidopsis thaliana] gi|20334898|gb|AAM16205.1|
AT5g65390/MNA5_12 [Arabidopsis thaliana]
Length = 130
Score = 47.0 bits (110), Expect = 6e-05
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Frame = -1
Query: 404 PPRKALSPTATPVSPAVSPSSTEESPAAVPA----------------AITPSSISGPPSE 273
PP +PT TP PAVSP+ T P++ P+ ++P ++ PS+
Sbjct: 41 PPAATPAPTTTP-PPAVSPAPTSSPPSSAPSPSSDAPTASPPAPEGPGVSPGELAPTPSD 99
Query: 272 APGPAANGAVLNRVAVSGS-AAIVIFAAAL 186
A P N A+ N+ V GS A +I+A L
Sbjct: 100 ASAPPPNAALTNKAFVVGSLVAAIIYAVVL 129
Score = 39.3 bits (90), Expect = 0.012
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 392 ALSPTATPVSPAVS---PSSTEESPAAVPAAITPSSISGPPSEAPGPAANGAVLNRVAVS 222
A SPT T P V+ P++T P A++P+ S PPS AP P+++ + A
Sbjct: 25 APSPTTTVTPPPVATPPPAATPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAPTASPPAPE 84
Query: 221 G 219
G
Sbjct: 85 G 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,620,696
Number of Sequences: 1393205
Number of extensions: 8686147
Number of successful extensions: 82821
Number of sequences better than 10.0: 1918
Number of HSP's better than 10.0 without gapping: 54783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77500
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
