Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004248A_C01 KMC004248A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188317.1| glycosyl hydrolase family 19 (chitinase); prote... 179 2e-44
ref|NP_172076.1| glycosyl hydrolase family 19 (chitinase); prote... 163 1e-39
dbj|BAC55635.1| OJ1081_B12.16 [Oryza sativa (japonica cultivar-g... 148 4e-35
pir||T46629 lp6 protein - loblolly pine gi|974294|gb|AAA75101.1|... 114 1e-24
gb|AAB01895.1| endochitinase gi|1359600|emb|CAA64868.1| chitinas... 76 3e-13
>ref|NP_188317.1| glycosyl hydrolase family 19 (chitinase); protein id: At3g16920.1,
supported by cDNA: gi_15724261, supported by cDNA:
gi_19699111 [Arabidopsis thaliana]
gi|7670022|dbj|BAA94976.1| basic chitinase [Arabidopsis
thaliana] gi|15724262|gb|AAL06524.1|AF412071_1
AT3g16920/K14A17_4 [Arabidopsis thaliana]
gi|19699112|gb|AAL90922.1| AT3g16920/K14A17_4
[Arabidopsis thaliana]
Length = 333
Score = 179 bits (455), Expect = 2e-44
Identities = 79/100 (79%), Positives = 88/100 (88%)
Frame = -2
Query: 554 IWKWMTPPEKHLPSAHDVFVGNWKPTKNDTLSKRVPGFGATINVLYGDQLCGQGSDNEGM 375
IW+WMTPP+KHLPSAHDVFVG WKPTKNDT +KR PGFGATINVLYGDQ+C G DN+ M
Sbjct: 225 IWRWMTPPKKHLPSAHDVFVGKWKPTKNDTAAKRTPGFGATINVLYGDQICNSGFDNDEM 284
Query: 374 NNIISHYLYYLDLMGVGREEAGPNEVLSCAEQEAFKPSGS 255
NNI+SHYLYYLDL+GVGREEAGP+E LSCA+QE F S S
Sbjct: 285 NNIVSHYLYYLDLIGVGREEAGPHEKLSCADQEPFSSSSS 324
>ref|NP_172076.1| glycosyl hydrolase family 19 (chitinase); protein id: At1g05850.1,
supported by cDNA: gi_12083323, supported by cDNA:
gi_14334487, supported by cDNA: gi_17226328, supported
by cDNA: gi_21280934 [Arabidopsis thaliana]
gi|25406872|pir||C86193 hypothetical protein [imported]
- Arabidopsis thaliana
gi|6850314|gb|AAF29391.1|AC009999_11 Contains similarity
to a basic endochitinase from Arabidopis thaliana
gb|AB023448, and contains a Chitinases class I PF|00182
domain. ESTs gb|AI995747, gb|AA728545, gb|Z26222,
gb|Z25683, gb|T88386, gb|T14122, gb|T04241, gb|N38122
come from this gene. [Arabidopsis thaliana]
gi|12083324|gb|AAG48821.1|AF332458_1 putative class I
chitinase [Arabidopsis thaliana]
gi|14334488|gb|AAK59442.1| putative class I chitinase
[Arabidopsis thaliana]
gi|17226329|gb|AAL37736.1|AF422178_1 chitinase-like
protein 1 [Arabidopsis thaliana]
gi|17226331|gb|AAL37737.1|AF422179_1 chitinase-like
protein 1 [Arabidopsis thaliana]
gi|21280935|gb|AAM44973.1| putative class I chitinase
[Arabidopsis thaliana]
Length = 321
Score = 163 bits (412), Expect = 1e-39
Identities = 75/106 (70%), Positives = 90/106 (84%)
Frame = -2
Query: 554 IWKWMTPPEKHLPSAHDVFVGNWKPTKNDTLSKRVPGFGATINVLYGDQLCGQGSDNEGM 375
IW+WMTP ++ PSAHD+FVGNWKPTKNDTLSKR P FG+T+NVLYG+ CGQGS + M
Sbjct: 217 IWRWMTPIKRAQPSAHDIFVGNWKPTKNDTLSKRGPTFGSTMNVLYGEYTCGQGS-IDPM 275
Query: 374 NNIISHYLYYLDLMGVGREEAGPNEVLSCAEQEAFKPSGSPFSSTT 237
NNIISHYLY+LDLMG+GRE+AGPN+ LSCAEQ+ F PS P SS++
Sbjct: 276 NNIISHYLYFLDLMGIGREDAGPNDELSCAEQKPFNPSTVPSSSSS 321
>dbj|BAC55635.1| OJ1081_B12.16 [Oryza sativa (japonica cultivar-group)]
Length = 316
Score = 148 bits (374), Expect = 4e-35
Identities = 70/104 (67%), Positives = 83/104 (79%)
Frame = -2
Query: 554 IWKWMTPPEKHLPSAHDVFVGNWKPTKNDTLSKRVPGFGATINVLYGDQLCGQGSDNEGM 375
IW+WMTP ++ PSAHDVFVGNWKPTKNDTLSKR PGFGAT+N+LYGD +CGQGS ++ M
Sbjct: 216 IWRWMTPMKRKQPSAHDVFVGNWKPTKNDTLSKRYPGFGATMNILYGDLICGQGSIDK-M 274
Query: 374 NNIISHYLYYLDLMGVGREEAGPNEVLSCAEQEAFKPSGSPFSS 243
N I+SHY +YLDLMGVG ++AG N L CA+Q AF PS S
Sbjct: 275 NVIVSHYQHYLDLMGVGSDKAGDN--LDCADQVAFNPSSKNLDS 316
>pir||T46629 lp6 protein - loblolly pine gi|974294|gb|AAA75101.1| LP6
Length = 216
Score = 114 bits (284), Expect = 1e-24
Identities = 54/97 (55%), Positives = 66/97 (67%)
Frame = -2
Query: 554 IWKWMTPPEKHLPSAHDVFVGNWKPTKNDTLSKRVPGFGATINVLYGDQLCGQGSDNEGM 375
IW+WMTP + PSAH V VG W PTKNDT + R+PGFG TIN+L D CG SD++ M
Sbjct: 46 IWRWMTPMKVKQPSAHQVMVGKWVPTKNDTEALRLPGFGMTINILKADAECGTDSDDKQM 105
Query: 374 NNIISHYLYYLDLMGVGREEAGPNEVLSCAEQEAFKP 264
N I+HYL +LD M VGRE AG N + C+EQ+ P
Sbjct: 106 NTRIAHYLDFLDHMDVGRENAGDN--VDCSEQKVLNP 140
>gb|AAB01895.1| endochitinase gi|1359600|emb|CAA64868.1| chitinase Ib [Castanea
sativa]
Length = 316
Score = 75.9 bits (185), Expect = 3e-13
Identities = 41/95 (43%), Positives = 55/95 (57%)
Frame = -2
Query: 554 IWKWMTPPEKHLPSAHDVFVGNWKPTKNDTLSKRVPGFGATINVLYGDQLCGQGSDNEGM 375
IW WMTP + + PS+HDV +GNW+P+ DT + RVP +G N++ G CG GSD+ +
Sbjct: 228 IWFWMTP-QANKPSSHDVIIGNWRPSAADTSAGRVPSYGVITNIINGGLECGHGSDDR-V 285
Query: 374 NNIISHYLYYLDLMGVGREEAGPNEVLSCAEQEAF 270
N I Y Y D +GV G N L C Q+ F
Sbjct: 286 ANRIGFYKRYCDTLGV---SYGNN--LDCYNQKPF 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,663,240
Number of Sequences: 1393205
Number of extensions: 11542576
Number of successful extensions: 27808
Number of sequences better than 10.0: 227
Number of HSP's better than 10.0 without gapping: 27012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27787
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
