Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004241A_C01 KMC004241A_c01
(387 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA15990.1| Streptococcus pyogenes AMV156, putative [Plasmodi... 32 1.9
ref|NP_496778.1| Putative protein, nematode specific [Caenorhabd... 31 3.3
ref|NP_701322.1| transport protein, putative [Plasmodium falcipa... 31 3.3
gb|EAA10352.1| ebiP2426 [Anopheles gambiae str. PEST] 31 3.3
emb|CAB95461.2| hypothetical protein [Trypanosoma brucei] 31 4.3
>gb|EAA15990.1| Streptococcus pyogenes AMV156, putative [Plasmodium yoelii yoelii]
Length = 1016
Score = 32.0 bits (71), Expect = 1.9
Identities = 28/102 (27%), Positives = 46/102 (44%), Gaps = 1/102 (0%)
Frame = -3
Query: 367 HYIPRSKYHPNKRLNVETNNDFKAVKIGSHFLKRNDKGRDQIAKCKTKQGKLSVGFFLAW 188
+YI KY P + ++ N + +K H+L + R I KTK K S FF
Sbjct: 780 YYINEDKYIPVETHSMNNNREINCIKNPLHYL---NNSRIYINADKTKTDKKSYDFFKIH 836
Query: 187 R-LPKGSLHD*ILTGMSSVYRRFIARADS*SSYHSFTFFFAF 65
L + S+H IL + + ++I + S+Y + F+ F
Sbjct: 837 NILSEKSIH--ILNNI-IYFVKYINNFYNKSTYEKYNFYMQF 875
>ref|NP_496778.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|7503270|pir||T22109 hypothetical protein F42G4.5 -
Caenorhabditis elegans gi|3877114|emb|CAB03094.1|
Hypothetical protein F42G4.5 [Caenorhabditis elegans]
Length = 247
Score = 31.2 bits (69), Expect = 3.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 5 RYPLPSNSSIQSYEDFPHI*KSKKKSEGMIRTLT 106
R+P+PS+S S+ P + + KKKS ++R L+
Sbjct: 17 RFPIPSHSFFMSFLTVPGVEQEKKKSNSILRQLS 50
>ref|NP_701322.1| transport protein, putative [Plasmodium falciparum 3D7]
gi|23496390|gb|AAN36046.1|AE014843_10 transport protein,
putative [Plasmodium falciparum 3D7]
Length = 872
Score = 31.2 bits (69), Expect = 3.3
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = -2
Query: 86 LHFFFCFFKYEENPHRIVLMNL 21
LHF +FKY+ NPH VL N+
Sbjct: 604 LHFDNVYFKYDSNPHNYVLKNI 625
>gb|EAA10352.1| ebiP2426 [Anopheles gambiae str. PEST]
Length = 857
Score = 31.2 bits (69), Expect = 3.3
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 SLQAKKKPTLNFPCLVLHFAIWSLPLSFLLRKWEPIL-TALKSLFVSTFSLLLG 341
+LQ K P++NF V++F +W++ LS LL+ + L T LKS + + + G
Sbjct: 428 TLQPKLFPSINFSLSVVYFTLWAI-LSHLLKSMQASLWTLLKSASLLSLFIWFG 480
>emb|CAB95461.2| hypothetical protein [Trypanosoma brucei]
Length = 143
Score = 30.8 bits (68), Expect = 4.3
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +2
Query: 221 LFGFTFCNLVSAFIISFEKMGTNFDSFEVIVCFHV*PFVGVIFTSW 358
LF FT F+ S TNF SF + C HV FV FTS+
Sbjct: 27 LFSFTVAQFCCFFLYSL----TNFPSFFLFPCSHVFRFVLFFFTSF 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,727,001
Number of Sequences: 1393205
Number of extensions: 6710805
Number of successful extensions: 14045
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14039
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
