Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004239A_C01 KMC004239A_c01
(381 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566036.1| expressed protein; protein id: At2g45180.1, sup... 77 7e-14
pir||S70586 proline-rich protein, 14K - kidney bean gi|1420885|g... 76 9e-14
pir||S53012 root-specific protein RCc3 - rice gi|786132|gb|AAA65... 75 2e-13
ref|NP_199501.1| extA (emb CAA47807.1); protein id: At5g46900.1 ... 73 8e-13
ref|NP_199500.1| extensin-like protein; protein id: At5g46890.1,... 73 8e-13
>ref|NP_566036.1| expressed protein; protein id: At2g45180.1, supported by cDNA:
17187., supported by cDNA: gi_15983387 [Arabidopsis
thaliana] gi|25307718|pir||D84887 probable proline-rich
protein [imported] - Arabidopsis thaliana
gi|2583134|gb|AAB82643.1| expressed protein [Arabidopsis
thaliana] gi|15983388|gb|AAL11562.1|AF424568_1
At2g45180/T14P1.1 [Arabidopsis thaliana]
gi|21553826|gb|AAM62919.1| unknown [Arabidopsis
thaliana]
Length = 134
Score = 76.6 bits (187), Expect = 7e-14
Identities = 34/42 (80%), Positives = 39/42 (91%)
Frame = -1
Query: 381 AAVCLCTALRANVLGINLNIPINLSLILNYCGKGVPKGFVCS 256
AAVCLCTAL+ANVLGINLN+PI+L+L+LNYCGK VP GF CS
Sbjct: 93 AAVCLCTALKANVLGINLNVPIDLTLLLNYCGKKVPHGFQCS 134
>pir||S70586 proline-rich protein, 14K - kidney bean gi|1420885|gb|AAC49369.1|
proline-rich 14 kDa protein
Length = 127
Score = 76.3 bits (186), Expect = 9e-14
Identities = 34/41 (82%), Positives = 37/41 (89%)
Frame = -1
Query: 381 AAVCLCTALRANVLGINLNIPINLSLILNYCGKGVPKGFVC 259
AAVCLCTALRANVLGINLN+PI L+L+LNYCGK PK FVC
Sbjct: 86 AAVCLCTALRANVLGINLNVPIKLNLLLNYCGKKTPKDFVC 126
>pir||S53012 root-specific protein RCc3 - rice gi|786132|gb|AAA65513.1| RCc3
Length = 133
Score = 75.1 bits (183), Expect = 2e-13
Identities = 33/41 (80%), Positives = 37/41 (89%)
Frame = -1
Query: 381 AAVCLCTALRANVLGINLNIPINLSLILNYCGKGVPKGFVC 259
AAVCLCTA+R N+LGINLN+PI+LSLILNYCGK VP GF C
Sbjct: 93 AAVCLCTAIRGNILGINLNLPIDLSLILNYCGKTVPTGFKC 133
>ref|NP_199501.1| extA (emb CAA47807.1); protein id: At5g46900.1 [Arabidopsis
thaliana] gi|297381|emb|CAA47807.1| extA [Arabidopsis
thaliana] gi|9759432|dbj|BAB10229.1| extA [Arabidopsis
thaliana]
Length = 127
Score = 73.2 bits (178), Expect = 8e-13
Identities = 31/42 (73%), Positives = 39/42 (92%)
Frame = -1
Query: 381 AAVCLCTALRANVLGINLNIPINLSLILNYCGKGVPKGFVCS 256
AAVCLCTAL+ANVLGINLN+PI+L+++LN+CGK VP GF C+
Sbjct: 86 AAVCLCTALKANVLGINLNVPISLNVVLNHCGKKVPSGFKCA 127
>ref|NP_199500.1| extensin-like protein; protein id: At5g46890.1, supported by cDNA:
155962. [Arabidopsis thaliana]
gi|9759431|dbj|BAB10228.1| extensin-like protein
[Arabidopsis thaliana] gi|26450171|dbj|BAC42204.1|
putative extensin [Arabidopsis thaliana]
gi|28973043|gb|AAO63846.1| putative extensin
[Arabidopsis thaliana]
Length = 127
Score = 73.2 bits (178), Expect = 8e-13
Identities = 31/42 (73%), Positives = 39/42 (92%)
Frame = -1
Query: 381 AAVCLCTALRANVLGINLNIPINLSLILNYCGKGVPKGFVCS 256
AAVCLCTAL+ANVLGINLN+PI+L+++LN+CGK VP GF C+
Sbjct: 86 AAVCLCTALKANVLGINLNVPISLNVVLNHCGKKVPSGFKCA 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,487,198
Number of Sequences: 1393205
Number of extensions: 5839214
Number of successful extensions: 37174
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 18471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31040
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
