Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004231A_C01 KMC004231A_c01
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN76362.1| serpin-like protein [Citrus x paradisi] 77 2e-13
pir||S65782 serpin - wheat gi|871551|emb|CAA90071.1| serpin [Tri... 72 5e-12
emb|CAB52710.1| serpin [Triticum aestivum] 71 2e-11
pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx ... 70 2e-11
gb|AAD31175.1| barley protein Z homolog [Avena fatua] 70 3e-11
>gb|AAN76362.1| serpin-like protein [Citrus x paradisi]
Length = 389
Score = 77.4 bits (189), Expect = 2e-13
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = -1
Query: 678 EVNEEETVAVAATAARMVLGGAGLCPHIDFVADHPFLFLIREDITGTILFVGQVLNPLDG 499
EVNEE T A AA+AA +VL L IDFVADHPF+F+IRED+TG ++F+G VLNPL G
Sbjct: 330 EVNEEGTEAAAASAATVVLRSILLLDKIDFVADHPFVFMIREDMTGLVMFIGHVLNPLAG 389
>pir||S65782 serpin - wheat gi|871551|emb|CAA90071.1| serpin [Triticum aestivum]
Length = 398
Score = 72.4 bits (176), Expect = 5e-12
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = -1
Query: 678 EVNEEETVAVAATAARMVLGGAGLCPHIDFVADHPFLFLIREDITGTILFVGQVLNPL 505
EVNE+ T A A+TA +MVL A +DF+ADHPFLFL+REDI+G +LF+G V+NPL
Sbjct: 338 EVNEQGTEAAASTAIKMVLQQARPPSVMDFIADHPFLFLVREDISGVVLFMGHVVNPL 395
>emb|CAB52710.1| serpin [Triticum aestivum]
Length = 398
Score = 70.9 bits (172), Expect = 2e-11
Identities = 35/58 (60%), Positives = 42/58 (72%)
Frame = -1
Query: 678 EVNEEETVAVAATAARMVLGGAGLCPHIDFVADHPFLFLIREDITGTILFVGQVLNPL 505
EVNE T A AAT A+ VL A +DF+ADHPFLFLIRED +G +LF+G V+NPL
Sbjct: 338 EVNETGTEAAAATIAKAVLLSASPPSDMDFIADHPFLFLIREDTSGVVLFIGHVVNPL 395
>pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx [Hordeum
vulgare subsp. vulgare] gi|444778|prf||1908213A protein
Zx
Length = 398
Score = 70.5 bits (171), Expect = 2e-11
Identities = 38/62 (61%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = -1
Query: 678 EVNEEETVAVAATAARMVLGGAGLCP-HIDFVADHPFLFLIREDITGTILFVGQVLNPLD 502
EVNEE T A A TA + L + P +DFVADHPFLFLIRED+TG +LFVG V NPL
Sbjct: 337 EVNEEGTEAAARTARVVTLRSLPVEPVKVDFVADHPFLFLIREDLTGVVLFVGHVFNPLV 396
Query: 501 GA 496
A
Sbjct: 397 SA 398
>gb|AAD31175.1| barley protein Z homolog [Avena fatua]
Length = 280
Score = 70.1 bits (170), Expect = 3e-11
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = -1
Query: 678 EVNEEETVAVAATAARMVLGGAGLCPHIDFVADHPFLFLIREDITGTILFVGQVLNPL 505
EVNEE T AVAATA ++ + IDFVADHPFLFLIRED++G +LFVG V+NP+
Sbjct: 222 EVNEEGTEAVAATATTIMQ--TSMPRTIDFVADHPFLFLIREDVSGVVLFVGHVVNPI 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,976,623
Number of Sequences: 1393205
Number of extensions: 13724413
Number of successful extensions: 62107
Number of sequences better than 10.0: 747
Number of HSP's better than 10.0 without gapping: 49256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58409
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
