Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004227A_C01 KMC004227A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC20221.1| ribosomal protein L2 [Glycine max] 296 2e-79
gb|AAF85800.1| 60S ribosomal protein L2 [Nicotiana tabacum] 290 2e-77
sp|P29766|RL2_LYCES 60S RIBOSOMAL PROTEIN L2 (L8) (RIBOSOMAL PRO... 288 3e-77
ref|NP_195336.1| putative ribosomal protein L8; protein id: At4g... 285 3e-76
sp|P25998|RL2_TOBAC 60S RIBOSOMAL PROTEIN L2 gi|7440614|pir||S22... 281 7e-75
>emb|CAC20221.1| ribosomal protein L2 [Glycine max]
Length = 260
Score = 296 bits (757), Expect = 2e-79
Identities = 141/145 (97%), Positives = 143/145 (98%)
Frame = -3
Query: 656 NVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGR 477
NVEHHVGDRGVFAR SGDYAIVISHNPDNDTSRIKLPSG+KKIVPSDCRAMIGQVAGGGR
Sbjct: 115 NVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGSKKIVPSDCRAMIGQVAGGGR 174
Query: 476 TEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 297
TEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQK
Sbjct: 175 TEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVSRDAPPGQK 234
Query: 296 VGLIAAKRTGRLRGQAAATAAKADK 222
VGLIAA+RTGRLRGQAAATAAKADK
Sbjct: 235 VGLIAARRTGRLRGQAAATAAKADK 259
>gb|AAF85800.1| 60S ribosomal protein L2 [Nicotiana tabacum]
Length = 174
Score = 290 bits (741), Expect = 2e-77
Identities = 137/145 (94%), Positives = 142/145 (97%)
Frame = -3
Query: 656 NVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGR 477
NVEH VGDRGVFARCSGDYAIVISHNPDN T+RIKLPSG+KKIVPS CRAMIGQVAGGGR
Sbjct: 29 NVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRAMIGQVAGGGR 88
Query: 476 TEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 297
TEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK
Sbjct: 89 TEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 148
Query: 296 VGLIAAKRTGRLRGQAAATAAKADK 222
VGLIAA+RTGRLRGQAAATAAKADK
Sbjct: 149 VGLIAARRTGRLRGQAAATAAKADK 173
>sp|P29766|RL2_LYCES 60S RIBOSOMAL PROTEIN L2 (L8) (RIBOSOMAL PROTEIN TL2)
gi|71078|pir||R5TOL8 ribosomal protein L8, cytosolic -
tomato gi|19343|emb|CAA45863.1| ribosomal protein L2
[Lycopersicon esculentum]
Length = 260
Score = 288 bits (738), Expect = 3e-77
Identities = 136/145 (93%), Positives = 141/145 (96%)
Frame = -3
Query: 656 NVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGR 477
NVEH VGDRGVFARCSGDYAIVISHNPDN T+R+KLPSGAKKIVPS CRAMIGQVAGGGR
Sbjct: 115 NVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGR 174
Query: 476 TEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 297
TEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK
Sbjct: 175 TEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 234
Query: 296 VGLIAAKRTGRLRGQAAATAAKADK 222
VGLIAA+RTGRLRGQA ATAAKADK
Sbjct: 235 VGLIAARRTGRLRGQARATAAKADK 259
>ref|NP_195336.1| putative ribosomal protein L8; protein id: At4g36130.1, supported
by cDNA: gi_13605568, supported by cDNA: gi_13605872,
supported by cDNA: gi_16323279 [Arabidopsis thaliana]
gi|7440636|pir||T04582 ribosomal protein L8, cytosolic -
Arabidopsis thaliana gi|2961372|emb|CAA18119.1| putative
ribosomal protein L8 [Arabidopsis thaliana]
gi|3036817|emb|CAA18507.1| ribosomal protein L2
[Arabidopsis thaliana] gi|7270565|emb|CAB81522.1|
putative ribosomal protein L8 [Arabidopsis thaliana]
gi|13605569|gb|AAK32778.1|AF361610_1 AT4g36130/F23E13_20
[Arabidopsis thaliana]
gi|13605873|gb|AAK32922.1|AF367335_1 AT4g36130/F23E13_20
[Arabidopsis thaliana] gi|16323280|gb|AAL15395.1|
AT4g36130/F23E13_20 [Arabidopsis thaliana]
Length = 258
Score = 285 bits (730), Expect = 3e-76
Identities = 134/144 (93%), Positives = 141/144 (97%)
Frame = -3
Query: 656 NVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGR 477
NVEHHVGDRGVFAR SGDYAIVI+HNPDNDTSRIKLPSG+KKIVPS CRAMIGQVAGGGR
Sbjct: 115 NVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGR 174
Query: 476 TEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 297
TEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+K
Sbjct: 175 TEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKK 234
Query: 296 VGLIAAKRTGRLRGQAAATAAKAD 225
VGLIAA+RTGRLRGQAAA A+KAD
Sbjct: 235 VGLIAARRTGRLRGQAAALASKAD 258
>sp|P25998|RL2_TOBAC 60S RIBOSOMAL PROTEIN L2 gi|7440614|pir||S22641 ribosomal protein
L2, cytosolic - common tobacco gi|20001|emb|CAA44362.1|
60S ribosomal protein L2 [Nicotiana tabacum]
Length = 260
Score = 281 bits (718), Expect = 7e-75
Identities = 133/145 (91%), Positives = 138/145 (94%)
Frame = -3
Query: 656 NVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGR 477
NVEH VGDRGVFARCSG YAIVISHNPDN T+RIKLPSG+KKIVPS CR MIGQVAGGGR
Sbjct: 115 NVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGR 174
Query: 476 TEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 297
TEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQK
Sbjct: 175 TEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQK 234
Query: 296 VGLIAAKRTGRLRGQAAATAAKADK 222
VGLIA +RTGRLRGQAAATAAKADK
Sbjct: 235 VGLIAGRRTGRLRGQAAATAAKADK 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,503,266
Number of Sequences: 1393205
Number of extensions: 13582105
Number of successful extensions: 45747
Number of sequences better than 10.0: 368
Number of HSP's better than 10.0 without gapping: 42740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45267
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
