Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004224A_C01 KMC004224A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194792.1| putative protein; protein id: At4g30630.1, supp... 59 3e-08
gb|AAM64606.1| unknown [Arabidopsis thaliana] 57 2e-07
ref|NP_568871.1| putative protein; protein id: At5g57910.1, supp... 57 2e-07
dbj|BAB08861.1| emb|CAB79781.1~gene_id:MTI20.17~similar to unkno... 57 2e-07
ref|NP_699161.1| hypothetical protein MGC33884 [Homo sapiens] gi... 32 3.4
>ref|NP_194792.1| putative protein; protein id: At4g30630.1, supported by cDNA:
32848. [Arabidopsis thaliana] gi|25407668|pir||D85358
hypothetical protein AT4g30630 [imported] - Arabidopsis
thaliana gi|7269964|emb|CAB79781.1| putative protein
[Arabidopsis thaliana] gi|21592814|gb|AAM64763.1|
unknown [Arabidopsis thaliana]
Length = 237
Score = 59.3 bits (142), Expect = 3e-08
Identities = 34/73 (46%), Positives = 45/73 (61%)
Frame = -2
Query: 514 PFFDLNQISREEEELQGNPEPLWIEEPKRSALRVVSEEQLNDVKLSVCRNIGDGPSRAVK 335
P FDLNQISREEEE + N E + E K + L + + KL +C ++ +RAVK
Sbjct: 165 PGFDLNQISREEEEPEVNGEHMVAEAMKNAMLDNRISDLHVERKLPICGDVEKELNRAVK 224
Query: 334 RKISWQDQVALRV 296
RK++WQD VAL V
Sbjct: 225 RKVTWQDPVALSV 237
>gb|AAM64606.1| unknown [Arabidopsis thaliana]
Length = 207
Score = 56.6 bits (135), Expect = 2e-07
Identities = 40/80 (50%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Frame = -2
Query: 514 PFFDLNQISREEEE----LQGNPEPLWIEEPKRSALRVVS--EEQLNDVKLSVCRNIGDG 353
P FDLNQIS EEE+ + N E +EE ++S E Q DVK S CRN G+G
Sbjct: 131 PLFDLNQISGEEEQETEAVDNNQENTRVEESNSCKRLMISSIEMQQKDVKPSSCRNGGNG 190
Query: 352 PSRAVKRKISWQDQV-ALRV 296
+ KRKISWQD V ALRV
Sbjct: 191 SN---KRKISWQDPVAALRV 207
>ref|NP_568871.1| putative protein; protein id: At5g57910.1, supported by cDNA:
31005. [Arabidopsis thaliana]
gi|26453250|dbj|BAC43698.1| unknown protein [Arabidopsis
thaliana] gi|28950733|gb|AAO63290.1| At5g57910
[Arabidopsis thaliana]
Length = 207
Score = 56.6 bits (135), Expect = 2e-07
Identities = 40/80 (50%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Frame = -2
Query: 514 PFFDLNQISREEEE----LQGNPEPLWIEEPKRSALRVVS--EEQLNDVKLSVCRNIGDG 353
P FDLNQIS EEE+ + N E +EE ++S E Q DVK S CRN G+G
Sbjct: 131 PLFDLNQISGEEEQETEAVDNNQENTRVEESNSCKRLMISSIEMQQKDVKPSSCRNGGNG 190
Query: 352 PSRAVKRKISWQDQV-ALRV 296
+ KRKISWQD V ALRV
Sbjct: 191 SN---KRKISWQDPVAALRV 207
>dbj|BAB08861.1| emb|CAB79781.1~gene_id:MTI20.17~similar to unknown protein
[Arabidopsis thaliana]
Length = 166
Score = 56.6 bits (135), Expect = 2e-07
Identities = 40/80 (50%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Frame = -2
Query: 514 PFFDLNQISREEEE----LQGNPEPLWIEEPKRSALRVVS--EEQLNDVKLSVCRNIGDG 353
P FDLNQIS EEE+ + N E +EE ++S E Q DVK S CRN G+G
Sbjct: 90 PLFDLNQISGEEEQETEAVDNNQENTRVEESNSCKRLMISSIEMQQKDVKPSSCRNGGNG 149
Query: 352 PSRAVKRKISWQDQV-ALRV 296
+ KRKISWQD V ALRV
Sbjct: 150 SN---KRKISWQDPVAALRV 166
>ref|NP_699161.1| hypothetical protein MGC33884 [Homo sapiens]
gi|27805461|sp|Q8NHS0|DJB8_HUMAN DnaJ homolog subfamily
B member 8 gi|20810288|gb|AAH29521.1| Similar to DnaJ
(Hsp40) homolog, subfamily B, member 8 [Homo sapiens]
Length = 232
Score = 32.3 bits (72), Expect = 3.4
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 336 FTALLGPSPMFLQT-DSFTSLSCS--SLTTLSALLFGSSIHNGSGFPCNSSSS 485
F+A G P F++ SF L CS S TT S+ FG S SGF SS+
Sbjct: 134 FSAGFGEFPAFMEAFSSFNMLGCSGGSHTTFSSTSFGGSSSGSSGFKSVMSST 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,936,252
Number of Sequences: 1393205
Number of extensions: 9108861
Number of successful extensions: 21574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21561
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
