Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004222A_C01 KMC004222A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197030.2| putative protein; protein id: At5g15260.1, supp... 142 2e-33
pir||T49961 hypothetical protein F8M21.150 - Arabidopsis thalian... 142 2e-33
ref|NP_566133.1| Expressed protein; protein id: At3g01170.1, sup... 135 4e-31
gb|AAF26157.1|AC008261_14 unknown protein [Arabidopsis thaliana] 113 2e-24
ref|NP_197403.1| putative protein; protein id: At5g19020.1 [Arab... 93 2e-18
>ref|NP_197030.2| putative protein; protein id: At5g15260.1, supported by cDNA:
gi_18086572 [Arabidopsis thaliana]
gi|18086573|gb|AAL57710.1| AT5g15260/F8M21_150
[Arabidopsis thaliana] gi|21689601|gb|AAM67422.1|
AT5g15260/F8M21_150 [Arabidopsis thaliana]
Length = 234
Score = 142 bits (359), Expect = 2e-33
Identities = 72/110 (65%), Positives = 85/110 (76%), Gaps = 3/110 (2%)
Frame = -1
Query: 578 VACAVFTTWLLVA--STTRKCGNRYCKGLKKA-AEFDIQLETEDCVKNSPSLSKDGTVKK 408
++C + W++V + +CG CKGL+KA AEFDIQLETEDCVK+S S KK
Sbjct: 118 ISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKSSNS--GKSVSKK 175
Query: 407 GLFKLPCEHHRELEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPGPPEE 258
GLF+LP +HHRELEAELKKMAPPNGRAVLV RAKCGCSVGRLEVPGP ++
Sbjct: 176 GLFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQ 225
>pir||T49961 hypothetical protein F8M21.150 - Arabidopsis thaliana
gi|7671495|emb|CAB89336.1| putative protein [Arabidopsis
thaliana]
Length = 294
Score = 142 bits (359), Expect = 2e-33
Identities = 72/110 (65%), Positives = 85/110 (76%), Gaps = 3/110 (2%)
Frame = -1
Query: 578 VACAVFTTWLLVA--STTRKCGNRYCKGLKKA-AEFDIQLETEDCVKNSPSLSKDGTVKK 408
++C + W++V + +CG CKGL+KA AEFDIQLETEDCVK+S S KK
Sbjct: 102 ISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKSSNS--GKSVSKK 159
Query: 407 GLFKLPCEHHRELEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPGPPEE 258
GLF+LP +HHRELEAELKKMAPPNGRAVLV RAKCGCSVGRLEVPGP ++
Sbjct: 160 GLFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQ 209
>ref|NP_566133.1| Expressed protein; protein id: At3g01170.1, supported by cDNA:
105104. [Arabidopsis thaliana]
Length = 215
Score = 135 bits (340), Expect = 4e-31
Identities = 66/110 (60%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Frame = -1
Query: 578 VACAVFTTWLLVA-STTRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGTVKKGL 402
+ CA +TWL++ T ++CG CKGL+KA EFDIQLETE+CVK+S + K+G+
Sbjct: 109 IFCAAISTWLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKSSSN-------KRGM 161
Query: 401 FKLPCEHHRELEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPGPPEESK 252
F+LP HHRELEAELKKMAPPNGRAVLV RA+CGCSV RL V GP ++ +
Sbjct: 162 FELPRVHHRELEAELKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQR 211
>gb|AAF26157.1|AC008261_14 unknown protein [Arabidopsis thaliana]
Length = 596
Score = 113 bits (283), Expect = 2e-24
Identities = 56/92 (60%), Positives = 70/92 (75%), Gaps = 1/92 (1%)
Frame = -1
Query: 578 VACAVFTTWLLVA-STTRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGTVKKGL 402
+ CA +TWL++ T ++CG CKGL+KA EFDIQLETE+CVK+S + K+G+
Sbjct: 109 IFCAAISTWLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKSSSN-------KRGM 161
Query: 401 FKLPCEHHRELEAELKKMAPPNGRAVLVLRAK 306
F+LP HHRELEAELKKMAPPNGRAVLV RA+
Sbjct: 162 FELPRVHHRELEAELKKMAPPNGRAVLVFRAR 193
>ref|NP_197403.1| putative protein; protein id: At5g19020.1 [Arabidopsis thaliana]
Length = 939
Score = 93.2 bits (230), Expect = 2e-18
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Frame = -1
Query: 581 FVACAVFTTWLLVASTTRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGTVKKGL 402
F A ++ L S +RKC N CKG+KKA EFD+QL+TE+CVK+ G+VK+ +
Sbjct: 134 FFAASIAFLDLCCGSRSRKCRNPKCKGMKKAMEFDLQLQTEECVKS-------GSVKE-I 185
Query: 401 FKLPCEHHRE-------LEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPGPPEESKDEE 243
+LP + E L AEL+KMAP NGRAVL+ R+KCGC + +LE GP + ++
Sbjct: 186 DRLPWKGGSESNPDYECLRAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,511,177
Number of Sequences: 1393205
Number of extensions: 11049842
Number of successful extensions: 25103
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25086
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
