Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004220A_C01 KMC004220A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194136.1| putative protein; protein id: At4g24050.1, supp... 145 3e-34
ref|NP_176640.1| oxidoreductase, putative; protein id: At1g64590... 124 5e-28
gb|AAO17035.1| Hypothetical protein [Oryza sativa (japonica cult... 114 9e-25
gb|AAK83584.1| AT5g50130/MPF21_15 [Arabidopsis thaliana] gi|1969... 87 2e-16
ref|NP_568721.1| ribitol dehydrogenase-like; protein id: At5g501... 86 2e-16
>ref|NP_194136.1| putative protein; protein id: At4g24050.1, supported by cDNA:
gi_16612263 [Arabidopsis thaliana]
gi|7487174|pir||T13447 hypothetical protein T19F6.40 -
Arabidopsis thaliana gi|2262111|gb|AAB63619.1| ribitol
dehydrogenase isolog [Arabidopsis thaliana]
gi|5668633|emb|CAB51648.1| putative protein [Arabidopsis
thaliana] gi|7269254|emb|CAB81323.1| putative protein
[Arabidopsis thaliana]
gi|16612264|gb|AAL27501.1|AF439829_1 AT4g24050/T19F6_40
[Arabidopsis thaliana] gi|21928085|gb|AAM78071.1|
AT4g24050/T19F6_40 [Arabidopsis thaliana]
Length = 332
Score = 145 bits (366), Expect = 3e-34
Identities = 68/95 (71%), Positives = 83/95 (86%)
Frame = -3
Query: 527 VHPGIVRTRLTREREGLLTDIVFFLASKLLKTIPQAAATTCYVATNPGLLNVSG*YFGDC 348
VHPG+VRTRLTR+REGLLTD+VFFLASKL+KT+PQAAATTCYVATNP L+NVSG YF DC
Sbjct: 235 VHPGVVRTRLTRDREGLLTDLVFFLASKLVKTVPQAAATTCYVATNPRLVNVSGKYFTDC 294
Query: 347 NETSTSKLGSNSTEAAKLWAVSVLIISKGPNAAFD 243
NET+ S LG+NS+EA KLWA S +++++ +FD
Sbjct: 295 NETTPSGLGTNSSEATKLWAASEILVTQHSKTSFD 329
>ref|NP_176640.1| oxidoreductase, putative; protein id: At1g64590.1, supported by
cDNA: gi_15081623 [Arabidopsis thaliana]
gi|6633817|gb|AAF19676.1|AC009519_10 F1N19.16
[Arabidopsis thaliana] gi|15081624|gb|AAK82467.1|
At1g64590/F1N19_15 [Arabidopsis thaliana]
gi|27764968|gb|AAO23605.1| At1g64590/F1N19_15
[Arabidopsis thaliana]
Length = 334
Score = 124 bits (312), Expect = 5e-28
Identities = 61/96 (63%), Positives = 77/96 (79%)
Frame = -3
Query: 527 VHPGIVRTRLTREREGLLTDIVFFLASKLLKTIPQAAATTCYVATNPGLLNVSG*YFGDC 348
VHPGIV+TRLTR+REG++TD+VFFL SKLLK++PQAAATTCYVAT+P L NV G YF DC
Sbjct: 235 VHPGIVKTRLTRDREGVVTDLVFFLTSKLLKSVPQAAATTCYVATSPRLRNVCGKYFSDC 294
Query: 347 NETSTSKLGSNSTEAAKLWAVSVLIISKGPNAAFDL 240
NE +SK GS + +A +LW S L++S PN+ +L
Sbjct: 295 NEARSSKSGSCNLKAQRLWTASDLLVSP-PNSTTNL 329
>gb|AAO17035.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 332
Score = 114 bits (284), Expect = 9e-25
Identities = 55/82 (67%), Positives = 63/82 (76%)
Frame = -3
Query: 527 VHPGIVRTRLTREREGLLTDIVFFLASKLLKTIPQAAATTCYVATNPGLLNVSG*YFGDC 348
VHPGIVRTRL R+R+GL+TD+VF L SKLLKTIPQAAATTCYVA +P L VSG YF DC
Sbjct: 234 VHPGIVRTRLNRDRDGLVTDLVFLLLSKLLKTIPQAAATTCYVAAHPRLAGVSGRYFADC 293
Query: 347 NETSTSKLGSNSTEAAKLWAVS 282
NE S +N EA +LW +S
Sbjct: 294 NEALPSPAATNRHEAERLWQIS 315
>gb|AAK83584.1| AT5g50130/MPF21_15 [Arabidopsis thaliana]
gi|19699126|gb|AAL90929.1| AT5g50130/MPF21_15
[Arabidopsis thaliana]
Length = 339
Score = 86.7 bits (213), Expect = 2e-16
Identities = 45/86 (52%), Positives = 57/86 (65%)
Frame = -3
Query: 527 VHPGIVRTRLTREREGLLTDIVFFLASKLLKTIPQAAATTCYVATNPGLLNVSG*YFGDC 348
VHPGIV+T + R +GL TD +F +ASKLLK+I Q AATTCYVA + +SG YF DC
Sbjct: 236 VHPGIVKTAIIRAHKGLFTDSLFLIASKLLKSISQGAATTCYVALSNETKGLSGKYFADC 295
Query: 347 NETSTSKLGSNSTEAAKLWAVSVLII 270
NET+ S L ++ A KL S +I
Sbjct: 296 NETNCSDLANDEYVALKLCTQSRALI 321
>ref|NP_568721.1| ribitol dehydrogenase-like; protein id: At5g50130.1, supported by
cDNA: gi_15146201, supported by cDNA: gi_19699125,
supported by cDNA: gi_20260275 [Arabidopsis thaliana]
gi|20260276|gb|AAM13036.1| ribitol dehydrogenase-like
[Arabidopsis thaliana]
Length = 339
Score = 86.3 bits (212), Expect = 2e-16
Identities = 45/86 (52%), Positives = 57/86 (65%)
Frame = -3
Query: 527 VHPGIVRTRLTREREGLLTDIVFFLASKLLKTIPQAAATTCYVATNPGLLNVSG*YFGDC 348
VHPGIV+T + R +GL TD +F +ASKLLK+I Q AATTCYVA + +SG YF DC
Sbjct: 236 VHPGIVKTGIIRAHKGLFTDSLFLIASKLLKSISQGAATTCYVALSNETKGLSGKYFADC 295
Query: 347 NETSTSKLGSNSTEAAKLWAVSVLII 270
NET+ S L ++ A KL S +I
Sbjct: 296 NETNCSDLANDEYVALKLCTQSRALI 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,736,081
Number of Sequences: 1393205
Number of extensions: 9659692
Number of successful extensions: 22564
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 21917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22536
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
