Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004219A_C01 KMC004219A_c01
(774 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189198.1| hypothetical protein; protein id: At3g25700.1 [... 187 1e-46
dbj|BAB90037.1| putative chloroplast nucleoid DNA [Oryza sativa ... 100 2e-20
ref|NP_191467.1| putative protein; protein id: At3g59080.1, supp... 97 3e-19
pir||E84860 hypothetical protein At2g42980 [imported] - Arabidop... 96 4e-19
ref|NP_181826.1| putative chloroplast nucleoid DNA binding prote... 96 4e-19
>ref|NP_189198.1| hypothetical protein; protein id: At3g25700.1 [Arabidopsis
thaliana] gi|11994761|dbj|BAB03090.1| chloroplast
nucleoid DNA binding protein-like; nucellin-like protein
[Arabidopsis thaliana]
Length = 452
Score = 187 bits (475), Expect = 1e-46
Identities = 90/141 (63%), Positives = 111/141 (77%), Gaps = 2/141 (1%)
Frame = -2
Query: 770 SVWEIDDQGNGGTVVDSGTTLTFLAEPAYRQILAAFRRRVRLPAVEDPSLAFDLCVNVSG 591
S+WEIDD GNGGTVVDSGTTL FLAEPAYR ++AA RRRV+LP + + FDLCVNVSG
Sbjct: 311 SIWEIDDSGNGGTVVDSGTTLAFLAEPAYRSVIAAVRRRVKLPIADALTPGFDLCVNVSG 370
Query: 590 VARVK--FPKLRIGLAGKSVLSPPARNYFIEVADRVKCLAIQPAKPGSGFSVIGNLMQQG 417
V + + P+L+ +G +V PP RNYFIE ++++CLAIQ P GFSVIGNLMQQG
Sbjct: 371 VTKPEKILPRLKFEFSGGAVFVPPPRNYFIETEEQIQCLAIQSVDPKVGFSVIGNLMQQG 430
Query: 416 YLFQFEVDRSRVGFSRRGCAV 354
+LF+F+ DRSR+GFSRRGCA+
Sbjct: 431 FLFEFDRDRSRLGFSRRGCAL 451
>dbj|BAB90037.1| putative chloroplast nucleoid DNA [Oryza sativa (japonica
cultivar-group)]
Length = 484
Score = 100 bits (249), Expect = 2e-20
Identities = 57/143 (39%), Positives = 87/143 (59%), Gaps = 6/143 (4%)
Frame = -2
Query: 770 SVWEIDDQGNGGTVVDSGTTLTFLAEPAYRQILAAFRRRVR-LPAVE-DPSLAFDLCVNV 597
+VW+++ GG ++DSGT+LT LA+PAYR ++AA +R+ LP V DP FD C N
Sbjct: 346 AVWDVEQ--GGGAILDSGTSLTMLAKPAYRAVVAALSKRLAGLPRVTMDP---FDYCYNW 400
Query: 596 SGVA----RVKFPKLRIGLAGKSVLSPPARNYFIEVADRVKCLAIQPAKPGSGFSVIGNL 429
+ + P L + AG + L PPA++Y I+ A VKC+ +Q P G SVIGN+
Sbjct: 401 TSPSGSDVAAPLPMLAVHFAGSARLEPPAKSYVIDAAPGVKCIGLQEG-PWPGLSVIGNI 459
Query: 428 MQQGYLFQFEVDRSRVGFSRRGC 360
+QQ +L+++++ R+ F R C
Sbjct: 460 LQQEHLWEYDLKNRRLRFKRSRC 482
>ref|NP_191467.1| putative protein; protein id: At3g59080.1, supported by cDNA:
gi_15983375, supported by cDNA: gi_20466703 [Arabidopsis
thaliana] gi|11357516|pir||T47790 hypothetical protein
F17J16.130 - Arabidopsis thaliana
gi|7529751|emb|CAB86936.1| putative protein [Arabidopsis
thaliana] gi|15983376|gb|AAL11556.1|AF424562_1
AT3g59080/F17J16_130 [Arabidopsis thaliana]
gi|20466704|gb|AAM20669.1| putative protein [Arabidopsis
thaliana] gi|23198236|gb|AAN15645.1| putative protein
[Arabidopsis thaliana]
Length = 535
Score = 97.1 bits (240), Expect = 3e-19
Identities = 55/138 (39%), Positives = 79/138 (56%), Gaps = 2/138 (1%)
Frame = -2
Query: 764 WEIDDQGNGGTVVDSGTTLTFLAEPAYRQI--LAAFRRRVRLPAVEDPSLAFDLCVNVSG 591
W I G GGT++DSGTTL++ AEPAY I A + + + P D + D C NVSG
Sbjct: 398 WNISSDGAGGTIIDSGTTLSYFAEPAYEFIKNKIAEKAKGKYPVYRDFPI-LDPCFNVSG 456
Query: 590 VARVKFPKLRIGLAGKSVLSPPARNYFIEVADRVKCLAIQPAKPGSGFSVIGNLMQQGYL 411
+ V+ P+L I A +V + P N FI + + + CLA+ P S FS+IGN QQ +
Sbjct: 457 IHNVQLPELGIAFADGAVWNFPTENSFIWLNEDLVCLAML-GTPKSAFSIIGNYQQQNFH 515
Query: 410 FQFEVDRSRVGFSRRGCA 357
++ RSR+G++ CA
Sbjct: 516 ILYDTKRSRLGYAPTKCA 533
>pir||E84860 hypothetical protein At2g42980 [imported] - Arabidopsis thaliana
Length = 481
Score = 96.3 bits (238), Expect = 4e-19
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Frame = -2
Query: 764 WEIDDQGNGGTVVDSGTTLTFLAEPAYRQILAAFRRRVR--LPAVEDPSLAFDLCVNVSG 591
W I G+GGT++DSGTTL++ AEPAY I F +++ P D + D C NVSG
Sbjct: 342 WNISSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKMKENYPIFRDFPV-LDPCFNVSG 400
Query: 590 VA--RVKFPKLRIGLAGKSVLSPPARNYFIEVADRVKCLAIQPAKPGSGFSVIGNLMQQG 417
+ + P+L I +V + PA N FI +++ + CLAI P S FS+IGN QQ
Sbjct: 401 IEENNIHLPELGIAFVDGTVWNFPAENSFIWLSEDLVCLAIL-GTPKSTFSIIGNYQQQN 459
Query: 416 YLFQFEVDRSRVGFSRRGCA 357
+ ++ RSR+GF+ CA
Sbjct: 460 FHILYDTKRSRLGFTPTKCA 479
>ref|NP_181826.1| putative chloroplast nucleoid DNA binding protein; protein id:
At2g42980.1 [Arabidopsis thaliana]
gi|20197868|gb|AAM15292.1| putative chloroplast nucleoid
DNA binding protein [Arabidopsis thaliana]
gi|20197965|gb|AAD21712.2| putative chloroplast nucleoid
DNA binding protein [Arabidopsis thaliana]
Length = 527
Score = 96.3 bits (238), Expect = 4e-19
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Frame = -2
Query: 764 WEIDDQGNGGTVVDSGTTLTFLAEPAYRQILAAFRRRVR--LPAVEDPSLAFDLCVNVSG 591
W I G+GGT++DSGTTL++ AEPAY I F +++ P D + D C NVSG
Sbjct: 388 WNISSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKMKENYPIFRDFPV-LDPCFNVSG 446
Query: 590 VA--RVKFPKLRIGLAGKSVLSPPARNYFIEVADRVKCLAIQPAKPGSGFSVIGNLMQQG 417
+ + P+L I +V + PA N FI +++ + CLAI P S FS+IGN QQ
Sbjct: 447 IEENNIHLPELGIAFVDGTVWNFPAENSFIWLSEDLVCLAIL-GTPKSTFSIIGNYQQQN 505
Query: 416 YLFQFEVDRSRVGFSRRGCA 357
+ ++ RSR+GF+ CA
Sbjct: 506 FHILYDTKRSRLGFTPTKCA 525
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 768,677,809
Number of Sequences: 1393205
Number of extensions: 19778069
Number of successful extensions: 71997
Number of sequences better than 10.0: 332
Number of HSP's better than 10.0 without gapping: 62003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70491
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
