Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004217A_C01 KMC004217A_c01
(827 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB65281.1| L3 Ribosomal protein [Medicago sativa subsp. x v... 138 1e-31
dbj|BAA83471.1| Csf-3 [Cucumis sativus] 137 2e-31
ref|NP_175009.1| ribosomal protein; protein id: At1g43170.1, sup... 130 2e-29
gb|AAN31896.1| putative ribosomal protein [Arabidopsis thaliana] 130 2e-29
sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 gi|481228|pir||S383... 128 4e-29
>emb|CAB65281.1| L3 Ribosomal protein [Medicago sativa subsp. x varia]
Length = 388
Score = 138 bits (347), Expect = 1e-31
Identities = 66/80 (82%), Positives = 74/80 (92%)
Frame = -2
Query: 454 TPMGGFPHYGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVALEEIKLKFIDTSSKF 275
TPMGGFPHYGIVK+DFLMIKGGCVGPKKRV+TLRQSLL QTSR+ALE+IKLKFIDTS KF
Sbjct: 310 TPMGGFPHYGIVKEDFLMIKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSFKF 369
Query: 274 GHGRFQSTPREAEVLWTPES 215
GHGRFQ+T E + LWTP++
Sbjct: 370 GHGRFQTT-SENQSLWTPQA 388
Score = 117 bits (292), Expect = 3e-25
Identities = 55/68 (80%), Positives = 62/68 (90%)
Frame = +2
Query: 446 HWGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVALEEIKLKFIDTSSKFGHGRFQS 625
H+GIVK+DFLMIKGGCVGPKKRV+TLRQSLL QTSR+ALE+IKLKFIDTS KFGHGRFQ+
Sbjct: 317 HYGIVKEDFLMIKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSFKFGHGRFQT 376
Query: 626 TQEKQKFY 649
T E Q +
Sbjct: 377 TSENQSLW 384
>dbj|BAA83471.1| Csf-3 [Cucumis sativus]
Length = 219
Score = 137 bits (345), Expect = 2e-31
Identities = 66/73 (90%), Positives = 71/73 (96%)
Frame = +2
Query: 446 HWGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVALEEIKLKFIDTSSKFGHGRFQS 625
H+GIVK D+LMIKGGCVGPKKRV+TLRQSLL QTSRVALEEIKLKFIDTSSKFGHGRFQ+
Sbjct: 147 HYGIVKSDYLMIKGGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQT 206
Query: 626 TQEKQKFYGRLKA 664
TQEKQKF+GRLKA
Sbjct: 207 TQEKQKFFGRLKA 219
Score = 133 bits (335), Expect(2) = 2e-31
Identities = 65/83 (78%), Positives = 72/83 (86%)
Frame = -2
Query: 499 ANTASLDHEEIILHNTPMGGFPHYGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVA 320
++TA + + TPMGGFPHYGIVK D+LMIKGGCVGPKKRV+TLRQSLL QTSRVA
Sbjct: 125 SHTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIKGGCVGPKKRVITLRQSLLKQTSRVA 184
Query: 319 LEEIKLKFIDTSSKFGHGRFQST 251
LEEIKLKFIDTSSKFGHGRFQ+T
Sbjct: 185 LEEIKLKFIDTSSKFGHGRFQTT 207
Score = 25.0 bits (53), Expect(2) = 2e-31
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = -3
Query: 246 EKQKFYGRLKA 214
EKQKF+GRLKA
Sbjct: 209 EKQKFFGRLKA 219
>ref|NP_175009.1| ribosomal protein; protein id: At1g43170.1, supported by cDNA:
14534., supported by cDNA: gi_11935190, supported by
cDNA: gi_13487799, supported by cDNA: gi_13605656,
supported by cDNA: gi_14517417, supported by cDNA:
gi_15450558, supported by cDNA: gi_15982760, supported
by cDNA: gi_166857 [Arabidopsis thaliana]
gi|27735225|sp|P17094|RL3A_ARATH 60S ribosomal protein
L3 gi|25295007|pir||E96498 L3 cytoplasmic ribosomal
protein [imported] - Arabidopsis thaliana
gi|3617741|gb|AAC36018.1| L3 cytoplasmic ribosomal
protein [Arabidopsis thaliana]
gi|11935191|gb|AAG42011.1|AF327421_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|13487800|gb|AAK27726.1|AF361101_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|13605657|gb|AAK32822.1|AF361809_1 At1g43170/F1I21_18
[Arabidopsis thaliana] gi|14517418|gb|AAK62599.1|
At1g43170/F1I21_18 [Arabidopsis thaliana]
gi|15450559|gb|AAK96457.1| At1g43170/F1I21_18
[Arabidopsis thaliana] gi|15982761|gb|AAL09721.1|
At1g43170/F1I21_18 [Arabidopsis thaliana]
Length = 389
Score = 130 bits (328), Expect = 2e-29
Identities = 64/83 (77%), Positives = 73/83 (87%)
Frame = -2
Query: 499 ANTASLDHEEIILHNTPMGGFPHYGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVA 320
A+TA +++ TPMGGFPHYGIVKDD+LMIKG CVGPKKRVVTLRQSLLTQTSR+A
Sbjct: 295 AHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLA 354
Query: 319 LEEIKLKFIDTSSKFGHGRFQST 251
LEEIKLKFIDT+S FGHGRFQ++
Sbjct: 355 LEEIKLKFIDTASIFGHGRFQTS 377
Score = 122 bits (307), Expect = 5e-27
Identities = 62/93 (66%), Positives = 75/93 (79%)
Frame = +2
Query: 380 ANTASLDHEEIILHNTVVWESTHWGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVA 559
A+TA +++ T + H+GIVKDD+LMIKG CVGPKKRVVTLRQSLLTQTSR+A
Sbjct: 295 AHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLA 354
Query: 560 LEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRL 658
LEEIKLKFIDT+S FGHGRFQ++ EK +FY R+
Sbjct: 355 LEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387
>gb|AAN31896.1| putative ribosomal protein [Arabidopsis thaliana]
Length = 389
Score = 130 bits (328), Expect = 2e-29
Identities = 64/83 (77%), Positives = 73/83 (87%)
Frame = -2
Query: 499 ANTASLDHEEIILHNTPMGGFPHYGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVA 320
A+TA +++ TPMGGFPHYGIVKDD+LMIKG CVGPKKRVVTLRQSLLTQTSR+A
Sbjct: 295 AHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLA 354
Query: 319 LEEIKLKFIDTSSKFGHGRFQST 251
LEEIKLKFIDT+S FGHGRFQ++
Sbjct: 355 LEEIKLKFIDTASIFGHGRFQTS 377
Score = 122 bits (307), Expect = 5e-27
Identities = 62/93 (66%), Positives = 75/93 (79%)
Frame = +2
Query: 380 ANTASLDHEEIILHNTVVWESTHWGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVA 559
A+TA +++ T + H+GIVKDD+LMIKG CVGPKKRVVTLRQSLLTQTSR+A
Sbjct: 295 AHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLA 354
Query: 560 LEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRL 658
LEEIKLKFIDT+S FGHGRFQ++ EK +FY R+
Sbjct: 355 LEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387
>sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 gi|481228|pir||S38359 ribosomal protein
L3.e, cytosolic - rice gi|303853|dbj|BAA02155.1|
ribosomal protein L3 [Oryza sativa (japonica
cultivar-group)]
Length = 389
Score = 128 bits (321), Expect(2) = 4e-29
Identities = 61/68 (89%), Positives = 65/68 (94%)
Frame = -2
Query: 454 TPMGGFPHYGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVALEEIKLKFIDTSSKF 275
TPMGGFPHYG+VK D+LMIKG CVGPKKRVVTLRQSLL QTSR+ALEEIKLKFIDTSSKF
Sbjct: 310 TPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKF 369
Query: 274 GHGRFQST 251
GHGRFQ+T
Sbjct: 370 GHGRFQTT 377
Score = 128 bits (321), Expect = 1e-28
Identities = 61/73 (83%), Positives = 69/73 (93%)
Frame = +2
Query: 446 HWGIVKDDFLMIKGGCVGPKKRVVTLRQSLLTQTSRVALEEIKLKFIDTSSKFGHGRFQS 625
H+G+VK D+LMIKG CVGPKKRVVTLRQSLL QTSR+ALEEIKLKFIDTSSKFGHGRFQ+
Sbjct: 317 HYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQT 376
Query: 626 TQEKQKFYGRLKA 664
T EKQ+F+G+LKA
Sbjct: 377 TDEKQRFFGKLKA 389
Score = 22.7 bits (47), Expect(2) = 4e-29
Identities = 8/11 (72%), Positives = 11/11 (99%)
Frame = -3
Query: 246 EKQKFYGRLKA 214
EKQ+F+G+LKA
Sbjct: 379 EKQRFFGKLKA 389
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 679,811,398
Number of Sequences: 1393205
Number of extensions: 14435551
Number of successful extensions: 37271
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 26644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37243
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 42643890261
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
