Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004212A_C01 KMC004212A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09046 proline-rich protein F26K10.180 - Arabidopsis thalia... 88 5e-17
ref|NP_194559.2| predicted proline-rich protein; protein id: At4... 88 5e-17
dbj|BAB89688.1| P0503C12.12 [Oryza sativa (japonica cultivar-gro... 77 2e-13
dbj|BAB92521.1| OJ1276_B06.30 [Oryza sativa (japonica cultivar-g... 52 5e-06
gb|AAM96980.1| putative protein [Arabidopsis thaliana] gi|280597... 46 3e-04
>pir||T09046 proline-rich protein F26K10.180 - Arabidopsis thaliana
gi|7269684|emb|CAB79632.1| predicted proline-rich
protein [Arabidopsis thaliana]
Length = 508
Score = 88.2 bits (217), Expect = 5e-17
Identities = 45/73 (61%), Positives = 52/73 (70%)
Frame = -2
Query: 513 PHNLMVRNPSQPPQFTRSHPYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLLDR 334
PH N PP Y +LIEKLV+MGFRGDHV +VIQRMEE+GQP+DFN+LLDR
Sbjct: 438 PHQAGGGNIGAPPVLRSK--YGELIEKLVSMGFRGDHVMAVIQRMEESGQPIDFNTLLDR 495
Query: 333 LNVLSSVGPQRGW 295
L+ SS GP RGW
Sbjct: 496 LSGQSSGGPPRGW 508
>ref|NP_194559.2| predicted proline-rich protein; protein id: At4g28300.1, supported
by cDNA: gi_17380877, supported by cDNA: gi_20465846
[Arabidopsis thaliana] gi|17380878|gb|AAL36251.1|
putative proline-rich protein [Arabidopsis thaliana]
gi|20465847|gb|AAM20028.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 496
Score = 88.2 bits (217), Expect = 5e-17
Identities = 45/73 (61%), Positives = 52/73 (70%)
Frame = -2
Query: 513 PHNLMVRNPSQPPQFTRSHPYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLLDR 334
PH N PP Y +LIEKLV+MGFRGDHV +VIQRMEE+GQP+DFN+LLDR
Sbjct: 426 PHQAGGGNIGAPPVLRSK--YGELIEKLVSMGFRGDHVMAVIQRMEESGQPIDFNTLLDR 483
Query: 333 LNVLSSVGPQRGW 295
L+ SS GP RGW
Sbjct: 484 LSGQSSGGPPRGW 496
>dbj|BAB89688.1| P0503C12.12 [Oryza sativa (japonica cultivar-group)]
Length = 595
Score = 76.6 bits (187), Expect = 2e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = -2
Query: 516 APHNLMVRNPSQPPQFTRSHPYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLLD 337
AP N+ + +P Q R HPY ++IEK + MG+ + V +VIQRM E+GQP+DFN+LLD
Sbjct: 523 APGNVGMSHPGSH-QMMRGHPYGEMIEKAITMGYPREQVMNVIQRMTESGQPMDFNTLLD 581
Query: 336 RLNVLSSVGPQRGW 295
RLN S P R W
Sbjct: 582 RLNEAGSGAPPRAW 595
>dbj|BAB92521.1| OJ1276_B06.30 [Oryza sativa (japonica cultivar-group)]
Length = 699
Score = 51.6 bits (122), Expect = 5e-06
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = -2
Query: 456 PYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLLDRLNVLSSV-GPQRGW*GK 286
P +D++EK+ MGF + V + ++R+ E GQ VD N +LD+L S V PQ+GW G+
Sbjct: 642 PVDDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGWFGR 699
>gb|AAM96980.1| putative protein [Arabidopsis thaliana] gi|28059781|gb|AAO30092.1|
putative protein [Arabidopsis thaliana]
Length = 357
Score = 45.8 bits (107), Expect = 3e-04
Identities = 26/74 (35%), Positives = 37/74 (49%), Gaps = 8/74 (10%)
Frame = -2
Query: 486 SQPPQFTRSHPYNDLIEKLVNMGFRGDHVGSVIQRMEETGQPVDFNSLLDRL-------- 331
S P+ P +D+I+K+V+MGF D V ++ + E GQ VD N +LD+L
Sbjct: 282 SDSPRSGNRAPVDDVIDKVVSMGFPRDQVRGTVRTLTENGQAVDLNVVLDKLMNGDRGAM 341
Query: 330 NVLSSVGPQRGW*G 289
P RGW G
Sbjct: 342 MQQQQQQPPRGWFG 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,223,794
Number of Sequences: 1393205
Number of extensions: 10514778
Number of successful extensions: 22808
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22805
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
