Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004208A_C01 KMC004208A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_388104.1| similar to transcriptional regulator (AraC/XylS... 33 1.1
pir||F35216 FPD6 protein - fowlpox virus (strain FP-1) gi|61229|... 32 1.4
ref|NP_039020.1| ORF FPV057 Early transcription factor small sub... 32 1.4
ref|NP_704184.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.1
ref|NP_659656.1| Early transcription factor VETFs [Sheeppox virus] 30 5.4
>ref|NP_388104.1| similar to transcriptional regulator (AraC/XylS family) [Bacillus
subtilis] gi|7475884|pir||D69749 transcription regulator
AraC/XylS family homolog ybfI - Bacillus subtilis
gi|2632508|emb|CAB12016.1| ybfI [Bacillus subtilis
subsp. subtilis str. 168] gi|3599644|dbj|BAA33119.1|
ybfI [Bacillus subtilis]
Length = 275
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -3
Query: 215 PLTRIKMVCE----HFQENVSVGSLFSLSKIPKYHLV 117
P +KMVCE H+ ENV++ L L+ KYHL+
Sbjct: 166 PSDEVKMVCEFLEEHYAENVTLNDLSELTGWSKYHLL 202
>pir||F35216 FPD6 protein - fowlpox virus (strain FP-1) gi|61229|emb|CAA35069.1|
ORF FPD6 [Fowlpox virus]
Length = 605
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Frame = -1
Query: 391 ENKARTPFYLNQFVPINN*PILISNMYCLII-------ELVIK----FYIVGSDY*VS*P 245
+NK + PF L PI N PI +SN+ ++ +++I+ F I+ ++ VS
Sbjct: 153 KNKNKVPFLLLSGSPITNTPITLSNIISIMSDEGINFNDIIIQGKKVFQIILNEKGVSVL 212
Query: 244 NNTLLNKITYH 212
N L NKI+Y+
Sbjct: 213 KNILKNKISYY 223
>ref|NP_039020.1| ORF FPV057 Early transcription factor small subunit [Fowlpox virus]
gi|19857115|sp|P21966|ETF1_FOWPV Early transcription
factor 70 kDa subunit (VETF small subunit)
gi|7271555|gb|AAF44401.1|AF198100_48 ORF FPV057 Early
transcription factor small subunit [Fowlpox virus]
Length = 633
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Frame = -1
Query: 391 ENKARTPFYLNQFVPINN*PILISNMYCLII-------ELVIK----FYIVGSDY*VS*P 245
+NK + PF L PI N PI +SN+ ++ +++I+ F I+ ++ VS
Sbjct: 153 KNKNKVPFLLLSGSPITNTPITLSNIISIMSDEGINFNDIIIQGKKVFQIILNEKGVSVL 212
Query: 244 NNTLLNKITYH 212
N L NKI+Y+
Sbjct: 213 KNILKNKISYY 223
>ref|NP_704184.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498922|emb|CAD51000.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1576
Score = 30.8 bits (68), Expect = 4.1
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 39 VDNITRQCYSLVLYSHNEVKNIKVHVYQVVFWYLRQTE*GANTDIFL----KMFTHHF 200
++NI CY+++L S+ ++ N+ + + + Y+ + E N D FL K FT F
Sbjct: 698 IENIIHLCYNIILLSYKDIVNL--YTMKNEYLYIEKNEKDKNKDDFLLYSFKYFTTPF 753
>ref|NP_659656.1| Early transcription factor VETFs [Sheeppox virus]
Length = 635
Score = 30.4 bits (67), Expect = 5.4
Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 11/71 (15%)
Frame = -1
Query: 391 ENKARTPFYLNQFVPINN*PILISNMYCLIIELVIK-----------FYIVGSDY*VS*P 245
+NK + PF L PI N PI +SN+ L+ + I F I+ +D+ V+
Sbjct: 153 KNKNKIPFLLLSGSPITNTPITLSNIISLMSDEEINFGDIIVQGKKVFQILLNDHGVNVL 212
Query: 244 NNTLLNKITYH 212
N L +I+Y+
Sbjct: 213 KNILRGRISYY 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,587,338
Number of Sequences: 1393205
Number of extensions: 5985983
Number of successful extensions: 9776
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9774
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
