Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004204A_C01 KMC004204A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05887 hypothetical protein F6H11.60 - Arabidopsis thaliana... 203 1e-51
gb|AAM62916.1| unknown [Arabidopsis thaliana] 203 1e-51
ref|NP_201384.1| leucine rich repeat protein family; protein id:... 203 1e-51
ref|NP_190544.1| leucine rich repeat protein family; protein id:... 201 4e-51
dbj|BAA96753.1| unnamed protein product [Oryza sativa (japonica ... 65 7e-10
>pir||T05887 hypothetical protein F6H11.60 - Arabidopsis thaliana
gi|2827704|emb|CAA16677.1| LRR-like protein [Arabidopsis
thaliana]
Length = 445
Score = 203 bits (516), Expect = 1e-51
Identities = 95/130 (73%), Positives = 115/130 (88%)
Frame = -3
Query: 552 MCAYLNIIDLHQNLLTGPIPQQLGLLVRLSAFDVSNNRLAGPIPSSLTNRSGNLPRFNAS 373
+CAYLN+IDLH N L+G IP Q GLL RL+AFDVSNN+L+G IPS+L R+GNLPRFNAS
Sbjct: 316 LCAYLNVIDLHDNQLSGQIPFQFGLLARLTAFDVSNNKLSGQIPSNLAMRNGNLPRFNAS 375
Query: 372 SFVGNKDLYGYPLPPLRSKGLSILAIVGIGLGSGLASLVLSFTGVCIWLKVTDRKMAQEE 193
SF+GNK L+GYPL +++KGLSI+AIVGIGLGSG+ASLV+SFTGVCIWLK+T++KM +EE
Sbjct: 376 SFIGNKKLFGYPLEEMKNKGLSIMAIVGIGLGSGIASLVISFTGVCIWLKITEKKMEEEE 435
Query: 192 GKISHLMPDY 163
GKISH MP Y
Sbjct: 436 GKISHSMPVY 445
>gb|AAM62916.1| unknown [Arabidopsis thaliana]
Length = 279
Score = 203 bits (516), Expect = 1e-51
Identities = 95/130 (73%), Positives = 115/130 (88%)
Frame = -3
Query: 552 MCAYLNIIDLHQNLLTGPIPQQLGLLVRLSAFDVSNNRLAGPIPSSLTNRSGNLPRFNAS 373
+CAYLN+IDLH N L+G IP Q GLL RL+AFDVSNN+L+G IPS+L R+GNLPRFNAS
Sbjct: 150 LCAYLNVIDLHDNQLSGQIPFQFGLLARLTAFDVSNNKLSGQIPSNLAMRNGNLPRFNAS 209
Query: 372 SFVGNKDLYGYPLPPLRSKGLSILAIVGIGLGSGLASLVLSFTGVCIWLKVTDRKMAQEE 193
SF+GNK L+GYPL +++KGLSI+AIVGIGLGSG+ASLV+SFTGVCIWLK+T++KM +EE
Sbjct: 210 SFIGNKKLFGYPLEEMKNKGLSIMAIVGIGLGSGIASLVISFTGVCIWLKITEKKMEEEE 269
Query: 192 GKISHLMPDY 163
GKISH MP Y
Sbjct: 270 GKISHSMPVY 279
>ref|NP_201384.1| leucine rich repeat protein family; protein id: At5g65830.1,
supported by cDNA: 17160. [Arabidopsis thaliana]
gi|9758570|dbj|BAB09051.1| contains similarity to
receptor protein kinase-like protein~gene_id:K22J17.4
[Arabidopsis thaliana]
Length = 279
Score = 203 bits (516), Expect = 1e-51
Identities = 95/130 (73%), Positives = 115/130 (88%)
Frame = -3
Query: 552 MCAYLNIIDLHQNLLTGPIPQQLGLLVRLSAFDVSNNRLAGPIPSSLTNRSGNLPRFNAS 373
+CAYLN+IDLH N L+G IP Q GLL RL+AFDVSNN+L+G IPS+L R+GNLPRFNAS
Sbjct: 150 LCAYLNVIDLHDNQLSGQIPFQFGLLARLTAFDVSNNKLSGQIPSNLAMRNGNLPRFNAS 209
Query: 372 SFVGNKDLYGYPLPPLRSKGLSILAIVGIGLGSGLASLVLSFTGVCIWLKVTDRKMAQEE 193
SF+GNK L+GYPL +++KGLSI+AIVGIGLGSG+ASLV+SFTGVCIWLK+T++KM +EE
Sbjct: 210 SFIGNKKLFGYPLEEMKNKGLSIMAIVGIGLGSGIASLVISFTGVCIWLKITEKKMEEEE 269
Query: 192 GKISHLMPDY 163
GKISH MP Y
Sbjct: 270 GKISHSMPVY 279
>ref|NP_190544.1| leucine rich repeat protein family; protein id: At3g49750.1
[Arabidopsis thaliana] gi|11358042|pir||T46041
hypothetical protein T16K5.100 - Arabidopsis thaliana
gi|6723420|emb|CAB66913.1| putative protein [Arabidopsis
thaliana]
Length = 274
Score = 201 bits (512), Expect = 4e-51
Identities = 94/132 (71%), Positives = 117/132 (88%), Gaps = 2/132 (1%)
Frame = -3
Query: 552 MCAYLNIIDLHQNLLTGPIPQQLGLLVRLSAFDVSNNRLAGPIPSSLTNRSGNLPRFNAS 373
+CAYLN+IDLH N L+G IPQQLGLL RLSAFDVSNN+L+G IP+ L+NR+GN PRFNAS
Sbjct: 143 LCAYLNVIDLHDNELSGQIPQQLGLLARLSAFDVSNNKLSGQIPTYLSNRTGNFPRFNAS 202
Query: 372 SFVGNKDLYGYPLPP--LRSKGLSILAIVGIGLGSGLASLVLSFTGVCIWLKVTDRKMAQ 199
SF+GNK LYGYPL ++SKGLS++AIVGIGLGSG+ASL++SFTGVC+WL++T++K+ +
Sbjct: 203 SFIGNKGLYGYPLQEMMMKSKGLSVMAIVGIGLGSGIASLMISFTGVCLWLRITEKKIVE 262
Query: 198 EEGKISHLMPDY 163
EEGKIS MPDY
Sbjct: 263 EEGKISQSMPDY 274
>dbj|BAA96753.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9757673|dbj|BAB08192.1| Similar to Lycopersicon
esculentum Hcr2-5D (AF053998) [Oryza sativa (japonica
cultivar-group)]
Length = 1004
Score = 64.7 bits (156), Expect = 7e-10
Identities = 44/136 (32%), Positives = 64/136 (46%), Gaps = 33/136 (24%)
Frame = -3
Query: 540 LNIIDLHQNLLTGPIPQQLGLLVRLSAFDVSNNRLAGPIPSSLTN-------------RS 400
LN++++ N LTGPIP QLG L +L + D+S+N L+G IP L +
Sbjct: 858 LNVLNISHNSLTGPIPPQLGRLTQLESLDISSNELSGEIPQQLASLDFLTVLNLSYNKLE 917
Query: 399 GNLPR------FNASSFVGNKDLYGYPLP------------PLRSKGLSILAIV--GIGL 280
G +P F+ SSF+GN L G PL P + L +L + G+G
Sbjct: 918 GEIPESPHFLTFSNSSFLGNDGLCGRPLSKGCINITSLNVIPSKKNSLDVLLFLFAGLGF 977
Query: 279 GSGLASLVLSFTGVCI 232
G G A ++ G+ I
Sbjct: 978 GFGFALSIVVIWGIPI 993
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,996,461
Number of Sequences: 1393205
Number of extensions: 10278676
Number of successful extensions: 48564
Number of sequences better than 10.0: 935
Number of HSP's better than 10.0 without gapping: 40048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47722
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
