Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004198A_C01 KMC004198A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06385 probable Fe(II) transport protein, root - garden pea... 150 6e-36
gb|AAO17059.1| root iron transporter protein IRT1 [Malus xiaojin... 148 3e-35
gb|AAD30549.1|AF136580_1 iron-regulated transporter 2 [Lycopersi... 146 1e-34
gb|AAD30548.1|AF136579_1 iron-regulated transporter 1 [Lycopersi... 142 1e-33
ref|NP_174411.1| iron-regulated transporter protein, putative; p... 140 6e-33
>pir||T06385 probable Fe(II) transport protein, root - garden pea
gi|3153889|gb|AAC17441.1| root iron transporter protein
[Pisum sativum]
Length = 348
Score = 150 bits (379), Expect = 6e-36
Identities = 74/89 (83%), Positives = 83/89 (93%)
Frame = -3
Query: 458 FFFSVTTPFGIALGMAMSTSYKENSPSALIIVGLLNASSAGLLVYMALVDLLAADFMSPR 279
FFFS+TTP GIA+G+AMS++YKENSP ALI VGLLN SSAGLL+YMALVDLLAADFMS R
Sbjct: 260 FFFSITTPLGIAIGIAMSSNYKENSPKALITVGLLNGSSAGLLIYMALVDLLAADFMSRR 319
Query: 278 LQGSIKLQLKSYIAVFLGAGAMSLLAKWA 192
+QGSIKLQLKSY+AVFLGAG MSL+AKWA
Sbjct: 320 MQGSIKLQLKSYVAVFLGAGGMSLMAKWA 348
>gb|AAO17059.1| root iron transporter protein IRT1 [Malus xiaojinensis]
Length = 364
Score = 148 bits (373), Expect = 3e-35
Identities = 74/89 (83%), Positives = 81/89 (90%)
Frame = -3
Query: 458 FFFSVTTPFGIALGMAMSTSYKENSPSALIIVGLLNASSAGLLVYMALVDLLAADFMSPR 279
FFFS TTPFGIA+GMAM+ SYKENSP +LI VGLLNASSAGLL+YMALVDLLAADFM P+
Sbjct: 276 FFFSTTTPFGIAIGMAMTKSYKENSPKSLIAVGLLNASSAGLLIYMALVDLLAADFMGPK 335
Query: 278 LQGSIKLQLKSYIAVFLGAGAMSLLAKWA 192
LQ SIKLQ+KSYIAV LGAG MS+LAKWA
Sbjct: 336 LQRSIKLQIKSYIAVLLGAGGMSVLAKWA 364
>gb|AAD30549.1|AF136580_1 iron-regulated transporter 2 [Lycopersicon esculentum]
gi|9716482|gb|AAF97510.1|AF246266_2 iron-regulated
transporter 2 [Lycopersicon esculentum]
Length = 352
Score = 146 bits (368), Expect = 1e-34
Identities = 72/89 (80%), Positives = 82/89 (91%)
Frame = -3
Query: 458 FFFSVTTPFGIALGMAMSTSYKENSPSALIIVGLLNASSAGLLVYMALVDLLAADFMSPR 279
FFF+VTTPFGIALGMA+ST+Y+E SP ALI VGLLNASSAGLL+YMALVDLLAADFM +
Sbjct: 264 FFFAVTTPFGIALGMALSTTYEETSPRALITVGLLNASSAGLLIYMALVDLLAADFMGDK 323
Query: 278 LQGSIKLQLKSYIAVFLGAGAMSLLAKWA 192
LQGS+KLQ+KSY+AV LGAG MSL+AKWA
Sbjct: 324 LQGSVKLQIKSYMAVLLGAGGMSLMAKWA 352
>gb|AAD30548.1|AF136579_1 iron-regulated transporter 1 [Lycopersicon esculentum]
gi|9716481|gb|AAF97509.1|AF246266_1 iron-regulated
transporter 1 [Lycopersicon esculentum]
Length = 350
Score = 142 bits (359), Expect = 1e-33
Identities = 70/89 (78%), Positives = 82/89 (91%)
Frame = -3
Query: 458 FFFSVTTPFGIALGMAMSTSYKENSPSALIIVGLLNASSAGLLVYMALVDLLAADFMSPR 279
FFF+VTTPFGIALG+A+ST+Y+ENSP ALI VGLLNASSAGLL+YMALVDLLAADFM +
Sbjct: 262 FFFAVTTPFGIALGIALSTTYEENSPRALITVGLLNASSAGLLIYMALVDLLAADFMGDK 321
Query: 278 LQGSIKLQLKSYIAVFLGAGAMSLLAKWA 192
LQGS+KLQ+KSY+AV LGAG MS++A WA
Sbjct: 322 LQGSVKLQIKSYMAVLLGAGGMSVMAIWA 350
>ref|NP_174411.1| iron-regulated transporter protein, putative; protein id:
At1g31260.1 [Arabidopsis thaliana]
gi|17385792|gb|AAL38436.1|AF369913_1 putative metal
transporter ZIP10 [Arabidopsis thaliana]
Length = 355
Score = 140 bits (353), Expect = 6e-33
Identities = 69/89 (77%), Positives = 79/89 (88%)
Frame = -3
Query: 458 FFFSVTTPFGIALGMAMSTSYKENSPSALIIVGLLNASSAGLLVYMALVDLLAADFMSPR 279
FFF+VTTPFG+ LGMA+S +YKENSP +LI VGLLNASSAGLL+YMALVDLLAADFM +
Sbjct: 267 FFFAVTTPFGVVLGMALSKTYKENSPESLITVGLLNASSAGLLIYMALVDLLAADFMGQK 326
Query: 278 LQGSIKLQLKSYIAVFLGAGAMSLLAKWA 192
+Q SIKLQLKSY AV LGAG MS++AKWA
Sbjct: 327 MQRSIKLQLKSYAAVLLGAGGMSVMAKWA 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,236,539
Number of Sequences: 1393205
Number of extensions: 6861936
Number of successful extensions: 14806
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 14587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14792
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
