Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004196A_C01 KMC004196A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176682.1| hypothetical protein; protein id: At1g65020.1 [... 160 9e-39
gb|AAL67583.1|AC018929_5 unknown protein [Oryza sativa] 135 4e-31
pir||G96673 hypothetical protein F16G16.1 [imported] - Arabidops... 87 1e-16
>ref|NP_176682.1| hypothetical protein; protein id: At1g65020.1 [Arabidopsis
thaliana]
Length = 319
Score = 160 bits (405), Expect = 9e-39
Identities = 85/117 (72%), Positives = 98/117 (83%)
Frame = -3
Query: 526 LSTAPIWDRLELKGSKYVLGEFLEFKGKQEDIEALSYIRRSKVGRVTIQKTSMFGLAPSR 347
L TAP WDR+ELK SK VLGEFLEFKGKQED AL I+RSKV RV+IQKTSMFGLAPSR
Sbjct: 204 LGTAPTWDRVELKSSKIVLGEFLEFKGKQEDTLALRNIKRSKVDRVSIQKTSMFGLAPSR 263
Query: 346 LQVLYSLRDYRTEGSSTPPELNEVNVRSSTEIVFQPENASKVRKFKLSSVTSMLLSA 176
LQVLYS RDYR+EGSS E EV VRSSTE++FQP +++K++KFKLSS+ S+ LSA
Sbjct: 264 LQVLYSYRDYRSEGSS-GAESKEVTVRSSTEVLFQPRDSTKMKKFKLSSLVSISLSA 319
>gb|AAL67583.1|AC018929_5 unknown protein [Oryza sativa]
Length = 328
Score = 135 bits (339), Expect = 4e-31
Identities = 68/118 (57%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Frame = -3
Query: 526 LSTAPIWDRLELKGSKYVLGEFLEFKGKQEDIEALSYIRRSKVGRVTIQKTSMF-GLAPS 350
LST+P+WDRLELKG + +LGEF+EFKG+ +DI+AL ++RSKV R +QK+++F G S
Sbjct: 212 LSTSPMWDRLELKGDRNILGEFIEFKGRHDDIQALKCLKRSKVCRFIVQKSTLFGGFGRS 271
Query: 349 RLQVLYSLRDYRTEGSSTPPELNEVNVRSSTEIVFQPENASKVRKFKLSSVTSMLLSA 176
R+Q+LYS RDYR EG+S+ E E++V+ TEI+FQP ++ KV+KFKLSSV S+ LSA
Sbjct: 272 RVQILYSPRDYRAEGTSS-SEWKEISVKQYTEILFQPLHSKKVKKFKLSSVASVTLSA 328
>pir||G96673 hypothetical protein F16G16.1 [imported] - Arabidopsis thaliana
gi|6227000|gb|AAF06036.1|AC009360_1 EST gb|AI998705
comes from this gene. [Arabidopsis thaliana]
Length = 259
Score = 87.0 bits (214), Expect = 1e-16
Identities = 44/56 (78%), Positives = 47/56 (83%)
Frame = -3
Query: 526 LSTAPIWDRLELKGSKYVLGEFLEFKGKQEDIEALSYIRRSKVGRVTIQKTSMFGL 359
L TAP WDR+ELK SK VLGEFLEFKGKQED AL I+RSKV RV+IQKTSMFGL
Sbjct: 204 LGTAPTWDRVELKSSKIVLGEFLEFKGKQEDTLALRNIKRSKVDRVSIQKTSMFGL 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,850,599
Number of Sequences: 1393205
Number of extensions: 7141661
Number of successful extensions: 17630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17622
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
