Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004187A_C01 KMC004187A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174491.1| hypothetical protein; protein id: At1g32120.1 [... 112 1e-24
gb|AAM94299.1| hypothetical protein [Sorghum bicolor] 89 2e-17
gb|AAD27628.1|AF128457_2 hypothetical protein [Oryza sativa subs... 84 9e-16
gb|AAD27684.1|AF119222_16 hypothetical protein [Oryza sativa] 84 9e-16
gb|AAD27637.1|AF128457_11 hypothetical protein [Oryza sativa sub... 84 9e-16
>ref|NP_174491.1| hypothetical protein; protein id: At1g32120.1 [Arabidopsis thaliana]
gi|25518597|pir||E86445 hypothetical protein F3C3.9
[imported] - Arabidopsis thaliana
gi|10801373|gb|AAG23445.1|AC084165_11 hypothetical
protein [Arabidopsis thaliana]
Length = 1206
Score = 112 bits (281), Expect = 1e-24
Identities = 51/83 (61%), Positives = 62/83 (74%)
Frame = -1
Query: 469 DLCKGIAITLQGIWFYQTAFVFYGPMPPDGCKIRDNSITCHSDDSEVRGELLASFQLFVA 290
DLC GIA+TLQG+WFYQTAF YGPM P GC ++ NS+ C S DSEV GE LA+FQLF
Sbjct: 1124 DLCNGIAMTLQGLWFYQTAFTLYGPMMPQGCSLKQNSVVCRSVDSEVSGEFLANFQLFSL 1183
Query: 289 VLVVFVGTLASYAYAASKYGNSQ 221
VL V V + SY +AAS++G S+
Sbjct: 1184 VLAVLVCVVGSYVFAASRFGVSR 1206
>gb|AAM94299.1| hypothetical protein [Sorghum bicolor]
Length = 298
Score = 89.0 bits (219), Expect = 2e-17
Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 469 DLCKGIAITLQGIWFYQTAFVFYGPMPPDGC-KIRDNSITCHSDDSEVRGELLASFQLFV 293
DL G+ I LQG+WFYQTAF YGPM P GC + D I CH+ ++ R E LA+FQ F
Sbjct: 186 DLASGVLIALQGLWFYQTAFTLYGPMLPAGCARDADGHIDCHARAAQERAEQLANFQFFG 245
Query: 292 AVLVVFVGTLASYAYAASKYGNSQVTNLH 206
V + F L YA AA++YG+ ++ +H
Sbjct: 246 LVFLAFCYVLGCYAVAAARYGHPELAAMH 274
>gb|AAD27628.1|AF128457_2 hypothetical protein [Oryza sativa subsp. indica]
Length = 309
Score = 83.6 bits (205), Expect = 9e-16
Identities = 40/89 (44%), Positives = 55/89 (60%), Gaps = 1/89 (1%)
Frame = -1
Query: 469 DLCKGIAITLQGIWFYQTAFVFYGPMPPDGC-KIRDNSITCHSDDSEVRGELLASFQLFV 293
D+ G AI LQG+WFYQTAF YGP P GC + D I CH+ ++ R E LA+FQLF
Sbjct: 187 DIASGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLANFQLFG 246
Query: 292 AVLVVFVGTLASYAYAASKYGNSQVTNLH 206
V +V L +A AA+++G+ + +H
Sbjct: 247 LVFLVCAYALGCFAVAAARHGHPDLATMH 275
>gb|AAD27684.1|AF119222_16 hypothetical protein [Oryza sativa]
Length = 309
Score = 83.6 bits (205), Expect = 9e-16
Identities = 40/89 (44%), Positives = 55/89 (60%), Gaps = 1/89 (1%)
Frame = -1
Query: 469 DLCKGIAITLQGIWFYQTAFVFYGPMPPDGC-KIRDNSITCHSDDSEVRGELLASFQLFV 293
D+ G AI LQG+WFYQTAF YGP P GC + D I CH+ ++ R E LA+FQLF
Sbjct: 187 DIASGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLANFQLFG 246
Query: 292 AVLVVFVGTLASYAYAASKYGNSQVTNLH 206
V +V L +A AA+++G+ + +H
Sbjct: 247 LVFLVCAYALGCFAVAAARHGHPDLATMH 275
>gb|AAD27637.1|AF128457_11 hypothetical protein [Oryza sativa subsp. indica]
Length = 379
Score = 83.6 bits (205), Expect = 9e-16
Identities = 40/89 (44%), Positives = 55/89 (60%), Gaps = 1/89 (1%)
Frame = -1
Query: 469 DLCKGIAITLQGIWFYQTAFVFYGPMPPDGC-KIRDNSITCHSDDSEVRGELLASFQLFV 293
D+ G AI LQG+WFYQTAF YGP P GC + D I CH+ ++ R E LA+FQLF
Sbjct: 257 DIASGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLANFQLFG 316
Query: 292 AVLVVFVGTLASYAYAASKYGNSQVTNLH 206
V +V L +A AA+++G+ + +H
Sbjct: 317 LVFLVCAYALGCFAVAAARHGHPDLATMH 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,500,055
Number of Sequences: 1393205
Number of extensions: 7828614
Number of successful extensions: 20060
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19965
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
