Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004186A_C01 KMC004186A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF86688.1| MTD2 [Medicago truncatula] 137 1e-31
ref|NP_195772.1| putative protein; protein id: At5g01520.1, supp... 91 9e-18
dbj|BAC22423.1| RNA-binding protein-like~contains EST C28606(C61... 90 1e-17
ref|NP_568885.1| Expressed protein; protein id: At5g58787.1, sup... 85 5e-16
dbj|BAA97349.1| contains similarity to RNA binding-like protein~... 85 5e-16
>gb|AAF86688.1| MTD2 [Medicago truncatula]
Length = 243
Score = 137 bits (344), Expect = 1e-31
Identities = 60/69 (86%), Positives = 66/69 (94%)
Frame = -3
Query: 373 CMRSQSCPFCRDSLKRVNSGDLWIYTDMSEIVDMGTVFKENCKMLFLYIESLPLIIPDPR 194
C+RSQSCPFCRDSLKRVNSGDLWIYTD S+IVD+GT+FKENCK+LFLYIE LPLIIPDPR
Sbjct: 175 CLRSQSCPFCRDSLKRVNSGDLWIYTDTSDIVDVGTIFKENCKILFLYIEKLPLIIPDPR 234
Query: 193 HVSFDPFMR 167
HVS+DPF R
Sbjct: 235 HVSYDPFFR 243
>ref|NP_195772.1| putative protein; protein id: At5g01520.1, supported by cDNA:
gi_15292802, supported by cDNA: gi_20258864 [Arabidopsis
thaliana] gi|11282331|pir||T48173 hypothetical protein
F7A7.40 - Arabidopsis thaliana
gi|7327811|emb|CAB82268.1| putative protein [Arabidopsis
thaliana] gi|15292803|gb|AAK92770.1| unknown protein
[Arabidopsis thaliana] gi|20258865|gb|AAM14104.1|
unknown protein [Arabidopsis thaliana]
Length = 242
Score = 90.9 bits (224), Expect = 9e-18
Identities = 41/67 (61%), Positives = 49/67 (72%)
Frame = -3
Query: 367 RSQSCPFCRDSLKRVNSGDLWIYTDMSEIVDMGTVFKENCKMLFLYIESLPLIIPDPRHV 188
RSQSCPFCR SLKRVNSGDLWIYT +EI D+ ++KEN K L +YI+ LPL+ DP V
Sbjct: 176 RSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLV 235
Query: 187 SFDPFMR 167
+ P R
Sbjct: 236 PYAPLPR 242
>dbj|BAC22423.1| RNA-binding protein-like~contains EST C28606(C61758) [Oryza sativa
(japonica cultivar-group)]
Length = 283
Score = 90.1 bits (222), Expect = 1e-17
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = -3
Query: 367 RSQSCPFCRDSLKRVNSGDLWIYTDMSEIVDMGTVFKENCKMLFLYIESLPLIIPD 200
RSQSCPFCRDSLKRVNS DLWIYTD +IVD+ TV KEN + LF+YI+ LP +IP+
Sbjct: 173 RSQSCPFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVIPE 228
>ref|NP_568885.1| Expressed protein; protein id: At5g58787.1, supported by cDNA:
99033. [Arabidopsis thaliana] gi|21618154|gb|AAM67204.1|
RNA-binding protein-like protein [Arabidopsis thaliana]
gi|26452986|dbj|BAC43569.1| unknown protein [Arabidopsis
thaliana] gi|28973015|gb|AAO63832.1| unknown protein
[Arabidopsis thaliana]
Length = 242
Score = 85.1 bits (209), Expect = 5e-16
Identities = 36/61 (59%), Positives = 49/61 (80%)
Frame = -3
Query: 367 RSQSCPFCRDSLKRVNSGDLWIYTDMSEIVDMGTVFKENCKMLFLYIESLPLIIPDPRHV 188
RSQSCPFCRDSLKRV+SGDLW++ D ++ V++ + +EN K LF+YIE LPL++PD +
Sbjct: 174 RSQSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVYA 233
Query: 187 S 185
S
Sbjct: 234 S 234
>dbj|BAA97349.1| contains similarity to RNA binding-like protein~gene_id:MZN1.25
[Arabidopsis thaliana]
Length = 161
Score = 85.1 bits (209), Expect = 5e-16
Identities = 36/61 (59%), Positives = 49/61 (80%)
Frame = -3
Query: 367 RSQSCPFCRDSLKRVNSGDLWIYTDMSEIVDMGTVFKENCKMLFLYIESLPLIIPDPRHV 188
RSQSCPFCRDSLKRV+SGDLW++ D ++ V++ + +EN K LF+YIE LPL++PD +
Sbjct: 93 RSQSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVYA 152
Query: 187 S 185
S
Sbjct: 153 S 153
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,283,178
Number of Sequences: 1393205
Number of extensions: 10229673
Number of successful extensions: 23041
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23036
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
