Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004178A_C01 KMC004178A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176390.1| hypothetical protein; protein id: At1g61990.1, ... 60 2e-08
ref|NP_568185.1| expressed protein; protein id: At5g07900.1, sup... 59 2e-08
ref|NP_176387.1| hypothetical protein; protein id: At1g61960.1 [... 58 7e-08
dbj|BAC42126.1| unknown protein [Arabidopsis thaliana] 58 7e-08
ref|NP_176388.1| hypothetical protein; protein id: At1g61970.1 [... 57 1e-07
>ref|NP_176390.1| hypothetical protein; protein id: At1g61990.1, supported by cDNA:
gi_18087609 [Arabidopsis thaliana]
gi|7486685|pir||T02143 hypothetical protein F8K4.18 -
Arabidopsis thaliana gi|3367529|gb|AAC28514.1| Strong
similarity to gi|2160138 F19K23.6 gene product from A.
thaliana BAC gb|AC000375. [Arabidopsis thaliana]
gi|18087610|gb|AAL58935.1|AF462848_1 At1g61990/F8K4_18
[Arabidopsis thaliana] gi|23507789|gb|AAN38698.1|
At1g61990/F8K4_18 [Arabidopsis thaliana]
Length = 414
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/79 (37%), Positives = 49/79 (61%), Gaps = 3/79 (3%)
Frame = -3
Query: 488 SKEKLNPVMSFWVSQLGWDSSTLLASPITFGFSLETRIVPRASVVQYLLSKGLMKKGASL 309
S E + F V ++ W + L+ P FG+S+E RI+PR ++++ LLSKGL++KG+ L
Sbjct: 316 SVESVKKKNEFLVKKMKWPRNALVLHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSEL 375
Query: 308 VTPSCL---TDKLFLQKFV 261
S + TD+ FL ++V
Sbjct: 376 PAVSSVLSCTDEGFLDRYV 394
>ref|NP_568185.1| expressed protein; protein id: At5g07900.1, supported by cDNA:
22350., supported by cDNA: gi_13878064, supported by
cDNA: gi_17104654 [Arabidopsis thaliana]
gi|11281400|pir||T45615 hypothetical protein F13G24.100
- Arabidopsis thaliana gi|6562304|emb|CAB62602.1|
putative protein [Arabidopsis thaliana]
gi|10176724|dbj|BAB09954.1| gene_id:MXM12.14~unknown
protein [Arabidopsis thaliana]
gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
[Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
unknown protein [Arabidopsis thaliana]
gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
thaliana]
Length = 405
Score = 59.3 bits (142), Expect = 2e-08
Identities = 29/81 (35%), Positives = 50/81 (60%)
Frame = -3
Query: 488 SKEKLNPVMSFWVSQLGWDSSTLLASPITFGFSLETRIVPRASVVQYLLSKGLMKKGASL 309
S+ K+N M ++V+++ ++ P+ FSLE RI+PR SV + L+S GL+K+ SL
Sbjct: 310 SERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSL 369
Query: 308 VTPSCLTDKLFLQKFVTCFEK 246
+ +K+FL+K V +E+
Sbjct: 370 TSLLVPVEKVFLEKLVIKYEE 390
>ref|NP_176387.1| hypothetical protein; protein id: At1g61960.1 [Arabidopsis
thaliana] gi|7486682|pir||T02140 hypothetical protein
F8K4.15 - Arabidopsis thaliana gi|3367526|gb|AAC28511.1|
Strong similarity to gi|2160136 F19K23.4 gene product
from A. thaliana BAC gb|AC000375. [Arabidopsis thaliana]
Length = 457
Score = 57.8 bits (138), Expect = 7e-08
Identities = 31/82 (37%), Positives = 47/82 (56%), Gaps = 3/82 (3%)
Frame = -3
Query: 482 EKLNPVMSFWVSQLGWDSSTLLASPITFGFSLETRIVPRASVVQYLLSKGLMKKGASLVT 303
E + F V + W L++ P FG+SLE R VPR +V++ L+SKGLMK G+
Sbjct: 361 ETVKKKTEFIVKNMNWPLEALVSIPQVFGYSLEKRTVPRCNVIKTLISKGLMKDGSEAPP 420
Query: 302 PSCL---TDKLFLQKFVTCFEK 246
S + TD+ FL+++V +K
Sbjct: 421 MSSVLTSTDQAFLRRYVMKHDK 442
>dbj|BAC42126.1| unknown protein [Arabidopsis thaliana]
Length = 457
Score = 57.8 bits (138), Expect = 7e-08
Identities = 31/82 (37%), Positives = 47/82 (56%), Gaps = 3/82 (3%)
Frame = -3
Query: 482 EKLNPVMSFWVSQLGWDSSTLLASPITFGFSLETRIVPRASVVQYLLSKGLMKKGASLVT 303
E + F V + W L++ P FG+SLE R VPR +V++ L+SKGLMK G+
Sbjct: 361 ETVKKKTEFIVKNMNWPLEALVSIPQVFGYSLEKRTVPRCNVIKTLISKGLMKDGSEAPP 420
Query: 302 PSCL---TDKLFLQKFVTCFEK 246
S + TD+ FL+++V +K
Sbjct: 421 MSSVLTSTDQAFLRRYVMKHDK 442
>ref|NP_176388.1| hypothetical protein; protein id: At1g61970.1 [Arabidopsis
thaliana] gi|7486683|pir||T02141 hypothetical protein
F8K4.16 - Arabidopsis thaliana gi|3367527|gb|AAC28512.1|
Strong similarity to gi|2160138 F19K23.6 gene product
from A. thaliana BAC gb|AC000375. [Arabidopsis thaliana]
gi|22655087|gb|AAM98134.1| unknown protein [Arabidopsis
thaliana]
Length = 418
Score = 57.0 bits (136), Expect = 1e-07
Identities = 30/79 (37%), Positives = 49/79 (61%), Gaps = 3/79 (3%)
Frame = -3
Query: 488 SKEKLNPVMSFWVSQLGWDSSTLLASPITFGFSLETRIVPRASVVQYLLSKGLMKKGASL 309
S E + F V ++ W ++++P FG+SLE RIVPR +V++ L+SKGLM+ L
Sbjct: 323 STETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRN--EL 380
Query: 308 VTPSCL---TDKLFLQKFV 261
+ SC+ T ++FL ++V
Sbjct: 381 PSISCVLMCTKQVFLNRYV 399
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,611,595
Number of Sequences: 1393205
Number of extensions: 7209613
Number of successful extensions: 14790
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 14480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14786
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
