Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004161A_C01 KMC004161A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182029.1| mitochondrial elongation factor, putative; prot... 97 4e-20
ref|NP_175135.1| mitochondrial elongation factor, putative; prot... 97 4e-20
gb|AAK53868.1|AC016781_22 Mitochondrial elongation factor G [Ory... 92 2e-18
sp|Q9FE64|EFGM_ORYSA Elongation factor G, mitochondrial precurso... 92 2e-18
gb|AAK50578.1|AC084404_3 mitochondrial elongation factor G [Oryz... 92 2e-18
>ref|NP_182029.1| mitochondrial elongation factor, putative; protein id: At2g45030.1
[Arabidopsis thaliana] gi|25299486|pir||F84885
hypothetical protein At2g45030 [imported] - Arabidopsis
thaliana
Length = 754
Score = 97.4 bits (241), Expect = 4e-20
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -1
Query: 417 VITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKAAE 247
VITA+VPLNNMFGYSTSLRSMTQGKGEFTMEYKEHS VS++VQ QL+N Y +KA E
Sbjct: 698 VITANVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSAVSNEVQAQLVNAYSASKATE 754
>ref|NP_175135.1| mitochondrial elongation factor, putative; protein id: At1g45332.1
[Arabidopsis thaliana] gi|27923772|sp|Q9C641|EFGM_ARATH
Probable elongation factor G, mitochondrial precursor
(mEF-G) gi|25299485|pir||D96510 probable mitochondrial
elongation factor [imported] - Arabidopsis thaliana
gi|12321017|gb|AAG50635.1|AC083835_20 mitochondrial
elongation factor, putative [Arabidopsis thaliana]
Length = 754
Score = 97.4 bits (241), Expect = 4e-20
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -1
Query: 417 VITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKAAE 247
VITA+VPLNNMFGYSTSLRSMTQGKGEFTMEYKEHS VS++VQ QL+N Y +KA E
Sbjct: 698 VITANVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSAVSNEVQAQLVNAYSASKATE 754
>gb|AAK53868.1|AC016781_22 Mitochondrial elongation factor G [Oryza sativa]
Length = 770
Score = 91.7 bits (226), Expect = 2e-18
Identities = 41/57 (71%), Positives = 48/57 (83%)
Frame = -1
Query: 417 VITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKAAE 247
V+ HVPLNNMFGYST+LRSMTQGKGEF+MEY EH+ VS DVQ QL+NTYK ++ E
Sbjct: 714 VVVCHVPLNNMFGYSTALRSMTQGKGEFSMEYLEHNTVSQDVQMQLVNTYKASRGTE 770
>sp|Q9FE64|EFGM_ORYSA Elongation factor G, mitochondrial precursor (mEF-G)
gi|10129885|dbj|BAB13514.1| mitochondrial elongation
factor G [Oryza sativa (japonica cultivar-group)]
gi|10129887|dbj|BAB13515.1| mitochondrial elongation
factor G [Oryza sativa (japonica cultivar-group)]
Length = 757
Score = 91.7 bits (226), Expect = 2e-18
Identities = 41/57 (71%), Positives = 48/57 (83%)
Frame = -1
Query: 417 VITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKAAE 247
V+ HVPLNNMFGYST+LRSMTQGKGEF+MEY EH+ VS DVQ QL+NTYK ++ E
Sbjct: 701 VVVCHVPLNNMFGYSTALRSMTQGKGEFSMEYLEHNTVSQDVQMQLVNTYKASRGTE 757
>gb|AAK50578.1|AC084404_3 mitochondrial elongation factor G [Oryza sativa]
Length = 757
Score = 91.7 bits (226), Expect = 2e-18
Identities = 41/57 (71%), Positives = 48/57 (83%)
Frame = -1
Query: 417 VITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKAAE 247
V+ HVPLNNMFGYST+LRSMTQGKGEF+MEY EH+ VS DVQ QL+NTYK ++ E
Sbjct: 701 VVVCHVPLNNMFGYSTALRSMTQGKGEFSMEYLEHNTVSQDVQMQLVNTYKASRGTE 757
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,919,912
Number of Sequences: 1393205
Number of extensions: 6547109
Number of successful extensions: 15615
Number of sequences better than 10.0: 287
Number of HSP's better than 10.0 without gapping: 15313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15615
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
