Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004160A_C01 KMC004160A_c01
(455 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564944.1| bHLH protein; protein id: At1g68810.1, supporte... 43 0.001
dbj|BAB16490.1| P0665D10.15 [Oryza sativa (japonica cultivar-gro... 36 0.21
ref|NP_189199.1| bHLH protein; protein id: At3g25710.1, supporte... 34 0.80
ref|XP_133599.1| RIKEN cDNA 4931406N15 [Mus musculus] 32 3.0
ref|NP_081905.1| RIKEN cDNA 4931406N15 [Mus musculus] gi|2633310... 32 3.0
>ref|NP_564944.1| bHLH protein; protein id: At1g68810.1, supported by cDNA:
gi_18176097 [Arabidopsis thaliana]
gi|25404781|pir||H96712 probable DNA-binding protein
T6L1.1 [imported] - Arabidopsis thaliana
gi|12323209|gb|AAG51581.1|AC011665_2 putative
DNA-binding protein [Arabidopsis thaliana]
gi|12324140|gb|AAG52041.1|AC011914_11 putative
DNA-binding protein; 36199-34606 [Arabidopsis thaliana]
gi|18176098|gb|AAL59983.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|21689745|gb|AAM67516.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 368
Score = 43.1 bits (100), Expect = 0.001
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 437 LDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHPALRSVLHRFCV 258
L ++ L +KA+I T+G R+KNVL ++ EE + E+ E ++ G++ AL++V+ + V
Sbjct: 279 LKAMRLKTLKAEITTVGGRVKNVL-FVTGEESSGEEVE-EEYCIGTIEEALKAVMEKSNV 336
Query: 257 SQ-EVIGTQKRRRIS 216
+ G KR+R+S
Sbjct: 337 EESSSSGNAKRQRMS 351
>dbj|BAB16490.1| P0665D10.15 [Oryza sativa (japonica cultivar-group)]
gi|21327944|dbj|BAC00537.1| P0489G09.4 [Oryza sativa
(japonica cultivar-group)]
Length = 267
Score = 35.8 bits (81), Expect = 0.21
Identities = 27/91 (29%), Positives = 46/91 (49%), Gaps = 6/91 (6%)
Frame = -1
Query: 452 NIRQELDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHPALRSVL 273
++++ L L L ++ +++ TLG R++ + ++SC R A SV AL+SVL
Sbjct: 179 DVKRALQPLGLEVVGSEVTTLGGRVR-LAFLVSCGSRGGAAAA----AMASVRHALQSVL 233
Query: 272 HR------FCVSQEVIGTQKRRRISIFSSSS 198
+ F + KRR++S F SSS
Sbjct: 234 DKASSGFDFAPRAASLLGSKRRKVSTFESSS 264
>ref|NP_189199.1| bHLH protein; protein id: At3g25710.1, supported by cDNA: 247881.,
supported by cDNA: gi_16604443, supported by cDNA:
gi_18958019 [Arabidopsis thaliana]
gi|7939557|dbj|BAA95758.1| DNA-binding protein-like
[Arabidopsis thaliana] gi|16604444|gb|AAL24228.1|
AT3g25710/K13N2_1 [Arabidopsis thaliana]
gi|18958020|gb|AAL79583.1| AT3g25710/K13N2_1
[Arabidopsis thaliana] gi|21592500|gb|AAM64450.1|
putative HLH DNA-binding protein [Arabidopsis thaliana]
Length = 344
Score = 33.9 bits (76), Expect = 0.80
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -1
Query: 437 LDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAE 324
L SL L +KA+IAT+G R+KN+L + R ++D E
Sbjct: 235 LKSLRLRTLKAEIATVGGRVKNILFL----SREYDDEE 268
>ref|XP_133599.1| RIKEN cDNA 4931406N15 [Mus musculus]
Length = 466
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 3 KEPK*DVCFLFM*FIRRVHIQRGKSRSTTLQCVHMSLHG 119
K+P D+C +M ++++ R + TTL+ VH S HG
Sbjct: 229 KDPLQDICKKYMEDLKKICFYRDLNSKTTLKFVHTSFHG 267
>ref|NP_081905.1| RIKEN cDNA 4931406N15 [Mus musculus] gi|26333105|dbj|BAC30270.1|
unnamed protein product [Mus musculus]
Length = 621
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 3 KEPK*DVCFLFM*FIRRVHIQRGKSRSTTLQCVHMSLHG 119
K+P D+C +M ++++ R + TTL+ VH S HG
Sbjct: 229 KDPLQDICKKYMEDLKKICFYRDLNSKTTLKFVHTSFHG 267
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,527,106
Number of Sequences: 1393205
Number of extensions: 6899768
Number of successful extensions: 15771
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15769
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
