Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004157A_C01 KMC004157A_c01
(420 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA34488.1| KIAA0768 protein [Homo sapiens] 30 5.4
pir||T18398 latrophilin-3, splice variant bbag, brain-specific -... 30 5.4
pir||T18390 latrophilin-3, splice variant abag, brain-specific -... 30 5.4
pir||T18409 latrophilin-3, splice variant bbbh, brain-specific -... 30 5.4
pir||T18392 latrophilin-3, splice variant abbf, brain-specific -... 30 5.4
>dbj|BAA34488.1| KIAA0768 protein [Homo sapiens]
Length = 872
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +2
Query: 173 EQREQTFNPTCNK-SFVHILCTSVCSLHCCERITKHNQHTSCS 298
+Q E+ FNP C+ S+ T S C +T + HT+CS
Sbjct: 220 KQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCS 262
>pir||T18398 latrophilin-3, splice variant bbag, brain-specific - bovine
gi|4164067|gb|AAD05328.1| latrophilin 3 splice variant
bbag [Bos taurus]
Length = 1299
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +2
Query: 173 EQREQTFNPTCNK-SFVHILCTSVCSLHCCERITKHNQHTSCS 298
+Q E+ FNP C+ S+ T S C +T + HT+CS
Sbjct: 876 KQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCS 918
>pir||T18390 latrophilin-3, splice variant abag, brain-specific - bovine
gi|4164055|gb|AAD05322.1| latrophilin 3 splice variant
abag [Bos taurus]
Length = 1231
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +2
Query: 173 EQREQTFNPTCNK-SFVHILCTSVCSLHCCERITKHNQHTSCS 298
+Q E+ FNP C+ S+ T S C +T + HT+CS
Sbjct: 808 KQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCS 850
>pir||T18409 latrophilin-3, splice variant bbbh, brain-specific - bovine
gi|4164075|gb|AAD05332.1| latrophilin 3 splice variant
bbbh [Bos taurus]
Length = 1351
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +2
Query: 173 EQREQTFNPTCNK-SFVHILCTSVCSLHCCERITKHNQHTSCS 298
+Q E+ FNP C+ S+ T S C +T + HT+CS
Sbjct: 876 KQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCS 918
>pir||T18392 latrophilin-3, splice variant abbf, brain-specific - bovine
gi|4164059|gb|AAD05324.1| latrophilin 3 splice variant
abbf [Bos taurus]
Length = 1512
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +2
Query: 173 EQREQTFNPTCNK-SFVHILCTSVCSLHCCERITKHNQHTSCS 298
+Q E+ FNP C+ S+ T S C +T + HT+CS
Sbjct: 808 KQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCS 850
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 323,540,648
Number of Sequences: 1393205
Number of extensions: 6096633
Number of successful extensions: 14747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14720
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
