Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004150A_C01 KMC004150A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564656.1| membrane protein common family; protein id: At1... 182 3e-45
ref|NP_566435.1| membrane protein common family; protein id: At3... 178 5e-44
ref|NP_173086.1| membrane protein common family; protein id: At1... 174 1e-42
pir||G86298 protein F3O9.16 [imported] - Arabidopsis thaliana gi... 174 1e-42
pir||F96825 T8K14.13 [imported] - Arabidopsis thaliana gi|483576... 172 3e-42
>ref|NP_564656.1| membrane protein common family; protein id: At1g54320.1, supported
by cDNA: gi_15010741, supported by cDNA: gi_15450728,
supported by cDNA: gi_17386111 [Arabidopsis thaliana]
gi|25347305|pir||G96584 hypothetical protein F20D21.14
[imported] - Arabidopsis thaliana
gi|4585976|gb|AAD25612.1|AC005287_14 Unknown protein
[Arabidopsis thaliana] gi|15010742|gb|AAK74030.1|
At1g54320/F20D21_50 [Arabidopsis thaliana]
gi|15450729|gb|AAK96636.1| At1g54320/F20D21_50
[Arabidopsis thaliana]
gi|17386112|gb|AAL38602.1|AF446869_1 At1g54320/F20D21_50
[Arabidopsis thaliana]
Length = 349
Score = 182 bits (462), Expect = 3e-45
Identities = 86/102 (84%), Positives = 92/102 (89%)
Frame = -1
Query: 595 RTAALPTFRKLYGKIEMDLEKGDVIKVVLQNNYHTYSFNGKKKLVLSTTSWLGGKNDFLG 416
RTAALPTFRKLYGKIE DLE GD I V L NNY+TYSFNGKKKLVLSTTSWLGGKNDFLG
Sbjct: 247 RTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLG 306
Query: 415 IAYLTVGGLSFFLSMVFTIVYFVKPRQLGDPSYLSWNRNPGG 290
IAYLTVGG+ F L++ FTI+Y VKPR+LGDPSYLSWNRNPGG
Sbjct: 307 IAYLTVGGICFILALAFTIMYLVKPRRLGDPSYLSWNRNPGG 348
>ref|NP_566435.1| membrane protein common family; protein id: At3g12740.1, supported
by cDNA: 37019., supported by cDNA: gi_15028094,
supported by cDNA: gi_15294235, supported by cDNA:
gi_20258910 [Arabidopsis thaliana]
gi|11994416|dbj|BAB02418.1|
gb|AAD25612.1~gene_id:MBK21.12~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|15028095|gb|AAK76578.1| unknown protein [Arabidopsis
thaliana] gi|15294236|gb|AAK95295.1|AF410309_1
AT3g12740/MBK21_10 [Arabidopsis thaliana]
gi|20258911|gb|AAM14149.1| unknown protein [Arabidopsis
thaliana] gi|21593199|gb|AAM65148.1| unknown
[Arabidopsis thaliana]
Length = 350
Score = 178 bits (451), Expect = 5e-44
Identities = 83/102 (81%), Positives = 94/102 (91%)
Frame = -1
Query: 595 RTAALPTFRKLYGKIEMDLEKGDVIKVVLQNNYHTYSFNGKKKLVLSTTSWLGGKNDFLG 416
RTAALPTFRKLYGKIE DLEKG+ I+V LQNNY+TYSF+GKKKLVLSTTSWLGGKNDFLG
Sbjct: 248 RTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLG 307
Query: 415 IAYLTVGGLSFFLSMVFTIVYFVKPRQLGDPSYLSWNRNPGG 290
IAYLTVGG+ F L++ FT++Y VKPR+LGDP+YLSWNR PGG
Sbjct: 308 IAYLTVGGICFVLALAFTVMYLVKPRRLGDPTYLSWNRIPGG 349
>ref|NP_173086.1| membrane protein common family; protein id: At1g16360.1
[Arabidopsis thaliana]
Length = 316
Score = 174 bits (440), Expect = 1e-42
Identities = 80/102 (78%), Positives = 92/102 (89%)
Frame = -1
Query: 595 RTAALPTFRKLYGKIEMDLEKGDVIKVVLQNNYHTYSFNGKKKLVLSTTSWLGGKNDFLG 416
RTAALPTFRKLYGKI+ DL+ GD IKV+LQNNY+TYSFNGKKKLVLSTTSWLGG+NDFLG
Sbjct: 213 RTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLG 272
Query: 415 IAYLTVGGLSFFLSMVFTIVYFVKPRQLGDPSYLSWNRNPGG 290
IAYLTVG + FL++ F+++Y KPRQLGDPSYLSWNR+ GG
Sbjct: 273 IAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 314
>pir||G86298 protein F3O9.16 [imported] - Arabidopsis thaliana
gi|4966357|gb|AAD34688.1|AC006341_16 >F3O9.16
[Arabidopsis thaliana]
Length = 353
Score = 174 bits (440), Expect = 1e-42
Identities = 80/102 (78%), Positives = 92/102 (89%)
Frame = -1
Query: 595 RTAALPTFRKLYGKIEMDLEKGDVIKVVLQNNYHTYSFNGKKKLVLSTTSWLGGKNDFLG 416
RTAALPTFRKLYGKI+ DL+ GD IKV+LQNNY+TYSFNGKKKLVLSTTSWLGG+NDFLG
Sbjct: 250 RTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLG 309
Query: 415 IAYLTVGGLSFFLSMVFTIVYFVKPRQLGDPSYLSWNRNPGG 290
IAYLTVG + FL++ F+++Y KPRQLGDPSYLSWNR+ GG
Sbjct: 310 IAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 351
>pir||F96825 T8K14.13 [imported] - Arabidopsis thaliana
gi|4835763|gb|AAD30230.1|AC007202_12 T8K14.13
[Arabidopsis thaliana]
Length = 335
Score = 172 bits (436), Expect = 3e-42
Identities = 80/102 (78%), Positives = 90/102 (87%)
Frame = -1
Query: 595 RTAALPTFRKLYGKIEMDLEKGDVIKVVLQNNYHTYSFNGKKKLVLSTTSWLGGKNDFLG 416
RTAALPTFRKLYGKIE DL GD I V+LQNNY+TYSFNG+KKLVLSTTSWLGG+NDFLG
Sbjct: 232 RTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLG 291
Query: 415 IAYLTVGGLSFFLSMVFTIVYFVKPRQLGDPSYLSWNRNPGG 290
IAYLTVG + FL++ F ++Y VKPRQLGDPSYLSWNR+ GG
Sbjct: 292 IAYLTVGSICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSAGG 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,515,338
Number of Sequences: 1393205
Number of extensions: 12772849
Number of successful extensions: 33171
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 32156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33133
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
